Input parameters:

  Query = ENSMUSP00000057527 (Len=773)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000057527, Len=773):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIRDLSKMYPQTRHPAPHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIE 80  
WD40-rpts                                                                                      

Query       81 MHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGQQLQAQHLSHGHGLPVPLTPHPSGLQPPAI 160 
WD40-rpts                                                                                      

Query      161 PPIGSSAGLLALSSALGGQSHLPIKDEKKHHDNDHQRDRDSIKSSSVSPSASFRGSEKHRNSTDYSSESKKQKTEEKEIA 240 
WD40-rpts                                                                                      

Query      241 ARYDSDGEKSDDNLVVDVSNEDPSSPRGSPAHSPRENGLDKTRLLKKDAPISPASVASSSSTPSSKSKELSLNEKSTTPV 320 
WD40-rpts                                                                                      

Query      321 SKSNTPTPRTDAPTPGSNSTPGLRPVPGKPPGVDPLASSLRTPMAVPCPYPTPFGIVPHAGMNGELTSPGAAYAGLHNIS 400 
WD40-rpts                                                                                      

Query      401 PQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPAYSFHVSADGQMQPVPFPPDALIGPGIPRHARQ 480 
WD40-rpts                    (____________WD 1____________)                        (___________

Query      481 INTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCRLLPDGRTLIVGGEASTLSIW 560 
WD40-rpts      _________WD 2____________________)(_____________________WD 3____________________

Query      561 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 640 
WD40-rpts      )     (_________________WD 4________________)   (_________________WD 5__________

Query      641 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLHVTKPDKYQLHLHESCVLSLKFAHCGKWFVSTG 720 
WD40-rpts      ______)(__________________WD 6_________________)(__________________WD 7_________

Query      721 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 773 
WD40-rpts      ________)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000057527 (Len=773):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   415-444      2.96  236.95  0.03918       10.0%     16.51
  WD 2:  Seg  7   469-514      5.91  358.70  0.00091       25.0%     50.24
  WD 3:  Seg 11   515-561      7.33  417.44  0.00015       25.0%     48.96
  WD 4:  Seg 14   567-605      8.34  459.26  4.0e-05       30.0%     56.69
  WD 5:  Seg 18   609-647      9.84  521.05  5.9e-06       35.0%     54.42
  WD 6:  Seg 22   648-688      6.79  395.24  0.00029       25.0%     52.38
  WD 7:  Seg 26   689-729      8.21  453.88  4.7e-05       30.0%     55.16
  WD 8:  Seg 30   730-770      7.50  424.63  0.00012       32.5%     53.80

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  415-444    -------------------------AYGRSPVVGFDPHHHMRVPAIPPNLTGIPG
   WD 2  469-514    LIG-------PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 3  515-561    ISHPGNKSPVS-------QLDCL-NRDNYIRSCRLLPDGRTLIVGGEASTLSIWD
   WD 4  567-605    -PR-------I-------KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 5  609-647    -QT-------L-------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 6  648-688    LRE-------G-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLH
   WD 7  689-729    VTK------PD-------KYQLH-LHESCVLSLKFAHCGKWFVSTGKDNLLNAWR
   WD 8  730-770    TPY------GA-------SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------C-------LRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD