Input parameters:

  Query = ENSMUSP00000057556 (Len=806)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000057556, Len=806):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 ILQELLDGEKVSQKVPMVIVQGHLVSEGILLFGQHHFYICENFTLSPTGDVYCTHHCLSNISDPFIFNMCSKDRSSDHYS 80  
WD40-rpts                                                                                      

Query       81 CQRHAYSDLRELRQARFLLQDIALEIFFQNGYSKLLVFYNSDRSKALKSFSTFQPSLKGKGTTEDPFNLRKHPGFDRTML 160 
WD40-rpts                                                                                      

Query      161 QRWQKREISNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTKERKLKFTQRFKDVE 240 
WD40-rpts                                                                                      

Query      241 KIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKSTWESASKENMSDVRELTPEFFYLP 320 
WD40-rpts                                                                                      

Query      321 EFLTNCNAVEFGCMQDGTTLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPY 400 
WD40-rpts                                                                                      

Query      401 FYGDRIDLGSITDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKNPGPGKDASTPVGLPGHSQSFLHSLPALRPSQV 480 
WD40-rpts                                                                                      

Query      481 TVKDMYLFSLGSESPKGAIGHIVPTEKSILAVEKNKLLMPPLWNRTFSWGFDDFSCCLGSYGSDKILMTFENLAAWGPCL 560 
WD40-rpts                                                                  (___________________

Query      561 CAVCPSPTMIVTSGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCILWDLDHLSRVA 640 
WD40-rpts      WD 1__________________)(______________________WD 2_____________________)   (____

Query      641 CLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDASHVIITGSKDGMVRI 720 
WD40-rpts      ____________WD 3________________)(______________________WD 4____________________

Query      721 WKTEDVKMPVPRQAVMEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSKLLVGDEKGRIF 800 
WD40-rpts      _)                                          (_________________WD 5______________

Query      801 CWSADG 806 
WD40-rpts      __)   

5 WD40-repeats found in QUERY=ENSMUSP00000057556 (Len=806):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   541-583      3.45  257.17  0.02111       15.0%     51.25
  WD 2:  Seg 18   584-632      5.97  361.21  0.00084       40.0%     56.34
  WD 3:  Seg 22   636-673      2.82  231.00  0.04693       17.5%     57.06
  WD 4:  Seg 26   674-722      2.85  232.20  0.04527       20.0%     54.75
  WD 5:  Seg 33   765-803      5.05  323.08  0.00275       22.5%     40.50

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  541-583    YG-------SDKILMTFENLAAWGPCLCAVCPS-----PTMIVTSGASAVVCIWE
   WD 2  584-632    LSLVKGRPRGLKLRQALYGHTQAVTCL-TASVT-----FSLLVSGSQDRTCILWD
   WD 3  636-673    -L---------SRVACLPVHREGISAI-AISDV-----SGTIVSCA-GAHLSLWN
   WD 4  674-722    VN-----GQPLASITTAWGPEGTITCC-CIVEGPAWDASHVIITGSKDGMVRIWK
   WD 5  765-803    -V---------ALSGKPSKASPAVTAL-AITRN-----QSKLLVGDEKGRIFCWS

   WD40 Template    TG---------ECLRTLSGHTSGVTSV-SFSPD-----GKRLVSGSEDGTIKVWD