Input parameters:

  Query = ENSMUSP00000060749 (Len=1062)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000060749, Len=1062):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKFRFRRQGADPQREKLKQELFAFHKTVEHGFPNQPSALAFDPELRIMAIGTRSGAVKIYGAPGVEFTGLHRDAATVTQ 80  
WD40-rpts                          (__________________WD 1__________________)  (_______________

Query       81 MHFLPGQGRLLTLLDDSSLHLWEIIHHNGCAHLEEGLSFHPPSRPSFDNASFPASLTRVTVVLLVAGNTAALGTESGSIF 160 
WD40-rpts      __WD 2________________)                                                         

Query      161 FLDVATLALLEGQTLSPDVVLRSVPDDYRCGKALGPVESLQGHLQDPSKILIGYSRGLLVIWSQATQSVDNVFLGNQQLE 240 
WD40-rpts                             (_________________WD 3_________________)(________________

Query      241 SLCWGRDGSSIISSHSDGSYAIWSTDTGSPPTLQPTVVTTPYGPFPCKAINKILWRSCESGDHFIIFSGGMPRASYGDRH 320 
WD40-rpts      __WD 4_________________)                                                        

Query      321 CVSVLRAETLVTLDFTSRVIDFFTVHSTQPEDECDNPQALAVLLEEELVVLDLQTPGWPAVPAPYLAPLHSSAITCSAHV 400 
WD40-rpts                                                                                      

Query      401 ANVPSKLWARIVSAGEQQSPQPASSALSWPITGGRNLAQEPSQRGLLLTGHEDGTVRFWDASGVALRPLYKLSTAGLFQT 480 
WD40-rpts                     (____________________WD 5___________________)                    

Query      481 DCEHADSLAQAVEDDWPPFRKVGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELSEVPAEHAVSVANVDLLQ 560 
WD40-rpts                                                                                      

Query      561 DREGFTWKGHERLNPHTGLLPWPAGFQPRMLIQCLPPAAVTAVTLHAEWSLVAFGTSHGFGLFDYQRKSPVLARCTLHPN 640 
WD40-rpts                                                                                      

Query      641 DSLAMEGPLSRVKSLKKSLRQSFRRIRKSRVSGKKRTPAASSKLQEANAQLAEQTCPHDLEMTPVQRRIEPRSADDSLSG 720 
WD40-rpts                                                                                      

Query      721 VVRCLYFADTFLRDATHHGPTMWAGTNSGSVFAYALEVPAATAGGEKRPEQAVEAVLGKEVQLMHRAPVVAIAVLDGRGR 800 
WD40-rpts                                                                                      

Query      801 PLPEPYEASRDLAQAPDMQGGHAVLIASEEQFKVFTLPKVSAKTKFKLTAHEGCRVRKVALATFASVMSEDYAETCLACL 880 
WD40-rpts                                                                                      

Query      881 TNLGDVHVFSVPGLRPQVHYSCIRKEDISGIASCVFTRHGQGFYLISPSEFERFSLSARNITEPLCSLDISWPQNATQPR 960 
WD40-rpts                                                                                      

Query      961 LQESPKLSQANGTRDIILAPESCEGSPSSAHSKRADTMEPPEAALSPVSIDSAASGDTMLDTTGDVTVEYVKDFLGSPED 1040
WD40-rpts                                                                                      

Query     1041 SEKNLRNLEADDACRAYTLLIK 1062
WD40-rpts                            

5 WD40-repeats found in QUERY=ENSMUSP00000060749 (Len=1062):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-62       5.31  333.95  0.00196       15.0%     45.67
  WD 2:  Seg  5    65-103      6.33  376.11  0.00053       25.0%     59.10
  WD 3:  Seg 16   184-223      4.26  290.61  0.00753       17.5%     43.08
  WD 4:  Seg 19   224-264      5.40  337.66  0.00175       17.5%     55.46
  WD 5:  Seg 31   416-460      6.19  370.21  0.00064       27.5%     16.70

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-62     EL-FAFHKTVEHGF-----PNQPSALAFDP-ELRIMAIGTRSGAVKIYG
   WD 2   65-103    -G-VEFTGL--HRD-----AATVTQMHFLP-GQGRLLTLLDDSSLHLWE
   WD 3  184-223    VP-DDYR-C--GKA-----LGPVESLQGHLQDPSKILIGYSRGLLVIWS
   WD 4  224-264    QATQSVDNV--FLG-----NQQLESLCWGR-DGSSIISSHSDGSYAIWS
   WD 5  416-460    EQ-QSPQPA--SSALSWPITGGRNLAQEPS-QRGLLLTGHEDGTVRFWD

   WD40 Template    TG-ECLRTL--SGH-----TSGVTSVSFSP-DGKRLVSGSEDGTIKVWD