Input parameters:

  Query = ENSMUSP00000061342 (Len=780)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000061342, Len=780):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METPPEMPSTDGHTRAIVTERYVVESKKSAAHVPLACSTQHCAFPLDGSRLCVWSSKDPSHQLLTLQGHHQLITAVVFGN 80  
WD40-rpts        (________________________WD 1_______________________)    (_________________WD 

Query       81 QIDPLLLCSASEDYIIMWNVAECREKTLKGLTPRGTILGSLLQTVLCLRFSLDDRAIAVCAGNKISVMDVEKQSVLVELK 160 
WD40-rpts      2_________________)            (________________WD 3________________)   (_______

Query      161 GHQGSVTAVEFCPWQAHTLISVSEDRSFKVWDFCVGSLIYSSSILTAYPLLNLLINEENQQLVTGSADGQLWIFSLMEGH 240 
WD40-rpts      __________WD 4_________________)   (_________________WD 5_________________)     

Query      241 HYHCVAHVDVRKKRETFTTRRMMAEQCSLPEDHQCRCRHEADKRGEAEATFPILSLAPCDLCLPDSQRGAFASECTKCLW 320 
WD40-rpts               (_________________WD 6_________________)  (_________________WD 7_______

Query      321 IGSSTALFILNLASFELEAALHFKEFQSLSVQVAGSCAMVSEPMSAKAFCMLSSMFGSKIAVLEIDLAALLSTQQYPRAG 400 
WD40-rpts      __________)   (_________________WD 8________________)   (___________________WD 9

Query      401 KVLSVLASSCVLPTSPLYFGIIKEKFPKLANTKQHAVKSVVEDRPLVFHTKVRSSGYTLAPHMAMFSPKTNIKHHNKRSS 480 
WD40-rpts      __________________)                            (_________________WD10___________

Query      481 KYKNNYKCKECSLENFLPRNLSRQVAVAQKPVAVSCLQFSGDGQKLACGLGNHLSLVFNASLSGPPAAFSGHDGAVSTIC 560 
WD40-rpts      _____)              (_________________WD11________________)   (_________________

Query      561 WSHDKRWLLSTGRDRTLRVWSVHRTELMLLLAPDAFPKPVTSAQFYYMDTFILLSSGPEFCLLKYHIDLCRDDIRRYKPK 640 
WD40-rpts      WD12________________)(____________________WD13___________________)        (_____

Query      641 SRYKPIFRLPMTSGADITSLSAVNDFYSHIVLTAGRDRAVEVFDLNAGCSAAVLAEVHSRPVHRICQNKGSSFVAQHSLA 720 
WD40-rpts      _________________WD14______________________)          (___________________WD15__

Query      721 YNLFLTAAVGDGIRLWDLRNLRLMCMKWAPAAFCTVLQDTQIRLLKWPSTQQLLSLSQPP 780 
WD40-rpts      ________________)(__________________WD16_________________)  

16 WD40-repeats found in QUERY=ENSMUSP00000061342 (Len=780):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-55       6.39  378.63  0.00049       17.5%     43.70
  WD 2:  Seg  5    60-99       6.15  368.81  0.00067       40.0%     49.02
  WD 3:  Seg 10   112-149      5.58  345.09  0.00139       20.0%     47.45
  WD 4:  Seg 13   153-192      8.70  474.08  2.5e-05       45.0%     57.38
  WD 5:  Seg 17   196-235      7.01  404.05  0.00022       22.5%     58.55
  WD 6:  Seg 22   250-289      7.87  439.64  7.4e-05       10.0%     51.02
  WD 7:  Seg 26   292-331      7.71  433.27  9.0e-05        5.0%     34.38
  WD 8:  Seg 29   335-373      6.88  398.82  0.00026       10.0%     50.28
  WD 9:  Seg 33   377-419      6.15  368.74  0.00067       17.5%     36.24
  WD10:  Seg 39   448-486      5.55  343.80  0.00145       17.5%     27.07
  WD11:  Seg 43   501-539      7.64  430.07  9.9e-05       20.0%     55.34
  WD12:  Seg 47   543-581      9.23  495.82  1.3e-05       30.0%     51.11
  WD13:  Seg 51   582-626      5.49  341.26  0.00157       20.0%     46.86
  WD14:  Seg 55   635-684      6.82  396.40  0.00028       17.5%     47.69
  WD15:  Seg 60   695-737      4.53  301.77  0.00533       12.5%     44.42
  WD16:  Seg 64   738-778      6.57  385.87  0.00039       10.0%     46.36

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-55     TP----------P----E-MPSTDGHTR-AIVTERYVVESKKSAAHVPLAC--STQH----CA----------FPLDGSRLCVWS
   WD 2   60-99     -S----------H----Q-LLTLQGHHQ-LI-------------TAVVFGNQIDPLL----LC----------SASEDYII-MWN
   WD 3  112-149    -T----------P----R-GTILGSLLQ-TV-------------LCLRFSL--DDRA----IA----------VCAGN-KISVMD
   WD 4  153-192    -Q----------S----V-LVELKGHQG-SV-------------TAVEFCP-WQAHT----LI----------SVSEDRSFKVWD
   WD 5  196-235    -G----------S----L-IYSSSILTAYPL-------------LNLLINE--ENQQ----LV----------TGSADGQLWIFS
   WD 6  250-289    VR----------K----K-RETFTTRRM-MA-------------EQCSLPE--DHQC----RC----------RHEADKRGEAEA
   WD 7  292-331    PI----------L----S-LAPCDLCLP-DS-------------QRGAFAS--ECTK----CL----------WIGSSTALFILN
   WD 8  335-373    -F----------E----L-EAALHFKEF-QS-------------LSVQVAG--SCAM----VS----------EPMSAKAFCMLS
   WD 9  377-419    -G----------S----K-IAVLEIDLA-AL-------------LSTQQYP--RAGKVLSVLA----------SSCVLPTSPLYF
   WD10  448-486    -F----------H----T-KVRSSGYTL-AP-------------HMAMFSP--KTNI----KH----------HNKRSSKYKNNY
   WD11  501-539    -L----------S----R-QVAVAQKPV-AV-------------SCLQFSG--DGQK----LA----------CGLGNHLSLVFN
   WD12  543-581    -S----------G----P-PAAFSGHDG-AV-------------STICWSH--DKRW----LL----------STGRDRTLRVWS
   WD13  582-626    VH----------RTELML-LLAPDAFPK-PV-------------TSAQFYY-MDTFI----LL----------SSGPEFCLLKYH
   WD14  635-684    RRYKPKSRYKPIF----R-LPMTSGADI-TS-------------LSAVNDF--YSHI----VL----------TAGRDRAVEVFD
   WD15  695-737    ----------------------AEVHSR-PV-------------HRICQNK--GSSF----VAQHSLAYNLFLTAAVGDGIRLWD
   WD16  738-778    LR----------N----LRLMCMKWAPA-AF-------------CTVLQDT--QIRL----LK----------WPSTQQLLSLSQ

   WD40 Template    TG----------E----C-LRTLSGHTS-GV-------------TSVSFSP--DGKR----LV----------SGSEDGTIKVWD