Input parameters:
Query = ENSMUSP00000072344 (Len=549)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000072344, Len=549):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGSRNSSSAGSGSLEPSEGLSRRGTGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQGRGAANLQLIQALSDSEEEHD 80
WD40-rpts (__________WD 1__________) (__________________WD 2_________________) (_
Query 81 SAWDGRLGDRYNPPVDATPDTRELEYNEIKTQVGLATGRLGLRRTALQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHF 160
WD40-rpts ________________WD 3________________) (________________WD 4________________)
Query 161 LPNDLSFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD 240
WD40-rpts (_________________WD 5________________) (__________________WD 6____________
Query 241 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISS 320
WD40-rpts _____) (________________WD 7_______________) (_________________WD 8__
Query 321 QILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAA 400
WD40-rpts _______________) (_________________WD 9________________) (_____________
Query 401 TQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT 480
WD40-rpts ____WD10________________)____________________WD11___________________) (_______
Query 481 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESDMNRVCSSGPTPVPCPSVAFSSPQ 549
WD40-rpts __________WD12________________)
12 WD40-repeats found in QUERY=ENSMUSP00000072344 (Len=549):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-26 3.97 278.45 0.01096 12.5% 28.04
WD 2: Seg 4 30-70 6.18 370.10 0.00064 15.0% 52.85
WD 3: Seg 8 79-117 5.65 348.22 0.00126 10.0% 32.57
WD 4: Seg 11 121-158 4.60 304.67 0.00487 15.0% 31.86
WD 5: Seg 15 162-200 8.51 466.30 3.2e-05 22.5% 52.40
WD 6: Seg 19 206-246 6.72 392.32 0.00032 22.5% 53.68
WD 7: Seg 24 257-293 8.09 448.83 5.6e-05 25.0% 41.44
WD 8: Seg 27 297-336 8.16 451.59 5.1e-05 30.0% 57.46
WD 9: Seg 31 345-383 9.47 505.93 9.4e-06 37.5% 51.14
WD10: Seg 35 387-425 4.31 292.49 0.00710 5.0% 10.93
WD11: Seg 36 425-469 6.80 395.50 0.00029 27.5% 49.48
WD12: Seg 40 473-511 9.75 517.59 6.6e-06 32.5% 56.24
Multiple sequence alignment of 12 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-26 -----------------------MGSRNSSS-AGSGSLEPSEGLSRRGTG
WD 2 30-70 SEEEEEEDED------VDLAQ--VLAYLLRR-GQVRLVQGRGAANLQLIQ
WD 3 79-117 HDSAWDGRLG------D--RY--NPPVDATP-DTRELEYNEIKTQVGLAT
WD 4 121-158 GLRRTALQQS------F--PQ--MLHQRERG-LCHR-GSFSLGEQSRVMS
WD 5 162-200 PNDLSFTDTY------S--QK--AFCGIYSK-DGQIFMSACQDQTIRLYD
WD 6 206-246 FHKFKSIKAR------D--VGWSVLDVAFTP-DGNHFLYSSWSDYIHICN
WD 7 257-293 --LDLRPDER------R--FA--VFSIAVSS-DGREVLGGANDGCLYVFD
WD 8 297-336 NRRTLQIESH------E--DD--VNAVAFADISSQILFSGGDDAICKVWD
WD 9 345-383 PKPVGALAGH------Q--DG--ITFIDSKG-DARYLISNSKDQTIKLWD
WD10 387-425 FSSREGMEAS------R--LA--ATQQNWDY-RWQQVPKIAWKKLKLPGD
WD11 425-469 DSSLMTYRGHGVLHTLI--RC--RFSPAHST-GQQFIYSGCSTGKVVVYD
WD12 473-511 GHIVKKLTNH------K--AC--VRDVSWHP-FEEKIVSSSWDGNLRLWQ
WD40 Template GECLRTLSGH------T--SG--VTSVSFSP-DGKRLVSGSEDGTIKVWD