Input parameters:

  Query = ENSMUSP00000075175 (Len=969)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000075175, Len=969):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQDAENVAVPEAAEERAEPARQQPASESPPTDEAAGSGGSEVGQTEDAEEDAEAGPEPEVRAKPAAQSEEETATSPAASP 80  
WD40-rpts                                                                                      

Query       81 TPQSAERSPSQEPSAPGKAEAVGEQARGHPSAGAEEEGGSDGSAAEAEPRALENGEADEPSFSDPEDFVDDVSEEELLGD 160 
WD40-rpts                                                                                      

Query      161 VLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVKNAD 240 
WD40-rpts                                                                                      

Query      241 GYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVSIEE 320 
WD40-rpts                                                                              (_______

Query      321 RARWTETYVRWSPKGTYLATFHQRGIALWGGDKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQDDPQAIIIWDILT 400 
WD40-rpts      _________WD 1________________)(_____________________WD 2____________________)   

Query      401 GHKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPA 480 
WD40-rpts                                                (___________________WD 3______________

Query      481 RVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAFAWE 560 
WD40-rpts      _____)                                                                          

Query      561 PNGSKFAVLHGEAPRISVSFYHVKSNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 640 
WD40-rpts                              (___________________WD 4___________________)(___________

Query      641 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIF 720 
WD40-rpts      _________WD 5____________________)                                              

Query      721 EQKDRLSQSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIEFCHRGSHSSGK 800 
WD40-rpts                                                                                      

Query      801 SGVISALCVTVPCPGSEATLHGEPRAGLLPVLSCSGLRVHPGFFYPDTALCLQPQVHSGDTRASALTLPCLGFYQPCLHW 880 
WD40-rpts                                                                                      

Query      881 SLTAVFLVAPLNSCCCPWGFQSLHLQLSGVSIHGLAVPVGQCRVAWRPSGVCTPTTYLCQKLWRHPHLPPVQVVAASVQV 960 
WD40-rpts                                                                                      

Query      961 GCGNKSNPV 969 
WD40-rpts               

5 WD40-repeats found in QUERY=ENSMUSP00000075175 (Len=969):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   313-350      3.28  250.07  0.02624       22.5%     52.04
  WD 2:  Seg 11   351-397      5.13  326.73  0.00246       27.5%     51.21
  WD 3:  Seg 19   443-486      3.57  262.25  0.01806       20.0%     36.94
  WD 4:  Seg 31   585-628      3.86  273.99  0.01257       17.5%     45.59
  WD 5:  Seg 35   629-674      4.53  301.80  0.00532       20.0%     53.61

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  313-350    -KDPVSIEE-RARWTETYVRWSPKGTYLA-----TFH-------Q------RG-IALWG
   WD 2  351-397    GDKFKQIQR-FSHQGVQLIDFSPCERYLV-----TFSPLMDTQDD------PQAIIIWD
   WD 3  443-486    -MGLLDKKS-LKISGIKDFSWSPGGNIIAFWVPEDKD-------I------PARVTLMQ
   WD 4  585-628    SNGKIELIKMFDKQQANTIFWSPQGQFVV--LAGLRS-------M------NGALAFVD
   WD 5  629-674    TSDCTVMNI-AEHYMASDVEWDPTGRYVV-----TSV-------SWWSHKVDNAYWLWT

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSPDGKRLV-----SGS-------E------DGTIKVWD