Input parameters:

  Query = ENSMUSP00000078426 (Len=764)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000078426, Len=764):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTGSLTAVLVLTVGTFSTSDEEGLCEENHVSEALLQGQAPTPHVLVDREASGAGDAPRETAGSSWTPAERPSPHSHMSEW 80  
WD40-rpts                                 (_________________WD 1________________)(_____________

Query       81 SLRSGKAGLPTRPDSYKHFTPRYKTSPRVKSVYFPPIGRERLRLKAIVGYNGNGRANMVWRPDTGFFAYTCGRLVVVEDL 160 
WD40-rpts      _______WD 2___________________)         (_________________WD 3________________) 

Query      161 HSGTQRHWLGHSQEISTLALNQDGQILASASCCGNTAARCQIRIWDVPKGLCRHLLSHHDTAVQALAFSPDDEFLVTLGD 240 
WD40-rpts       (____________________WD 4___________________)   (__________________WD 5________

Query      241 YADRNLALWSMATYELLSSTRLLEPVHGVAFNPWDANELICVGTNAITFWLLQHHGADTCFQVHREPIPEELGASELTSL 320 
WD40-rpts      _________)(__________________WD 6_________________)   (_____________________WD 7

Query      321 CYGASPLLYCGSSSGQVCVWDTGTGHCFLAWEADDGEIGVLLCSGSRLISGSNTKRLRLWAVGVVPELRRKGSSARSSSV 400 
WD40-rpts      ____________________)   (________________WD 8_______________)         (_________

Query      401 FMERELTLDGAVVSASFDSGMDMGVVGTTAGTIWYISWTEGTSTRLISGHRTKVNEVVFSPGESHCATCGEDGSVRVWSL 480 
WD40-rpts      ____________WD 9____________________)   (_________________WD10________________) 

Query      481 ASMELVIQFQVLNQSCLCLAWTPPSCELPEQQQVVAGYSDGTLRVFSISRTAMELKMHPHRTALTAIAFSTDGQTILSGD 560 
WD40-rpts        (____________________WD11___________________)   (_________________WD12________

Query      561 KDGLVAISHPCTGMTFRVLSDHRGAPISAIQSTSKEYGDLGVEGVELWLAASGDQRVSIWVSDWLRDRCELLEWLSFPAP 640 
WD40-rpts      ________)   (______________________WD13_____________________)       (___________

Query      641 AVSEAPGLLPPSLAAFCPWDKAILVCVGLGAHEEVIFYSLRQKQVIQKTPLPFFAMSLSLSPGSQLMVVGFAECMMRLLD 720 
WD40-rpts      ______WD14________________)              (_________________WD15________________)

Query      721 CASGTAQDLEGHDDSVHLCRFTPSGRLLFTAAHNEILVWEVTDP 764 
WD40-rpts      (_________________WD16_________________)    

16 WD40-repeats found in QUERY=ENSMUSP00000078426 (Len=764):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    28-66       6.02  363.23  0.00079        7.5%     21.24
  WD 2:  Seg  5    67-111      5.95  360.60  0.00086       15.0%     41.07
  WD 3:  Seg  9   121-159      3.94  277.42  0.01131       17.5%     49.54
  WD 4:  Seg 13   162-206      6.91  400.13  0.00025       27.5%     52.24
  WD 5:  Seg 17   210-250      8.09  448.65  5.6e-05       35.0%     55.44
  WD 6:  Seg 21   251-291      6.62  388.02  0.00037       17.5%     56.92
  WD 7:  Seg 25   295-341      4.99  320.79  0.00295       25.0%     50.81
  WD 8:  Seg 29   345-381      6.68  390.76  0.00034       25.0%     54.78
  WD 9:  Seg 34   391-437      6.41  379.41  0.00048       30.0%     45.83
  WD10:  Seg 38   441-479      9.52  507.97  8.9e-06       37.5%     57.13
  WD11:  Seg 42   483-527      6.70  391.51  0.00033       20.0%     57.55
  WD12:  Seg 46   531-569      8.84  479.85  2.1e-05       25.0%     59.53
  WD13:  Seg 50   573-621      6.50  383.23  0.00043       25.0%     52.47
  WD14:  Seg 54   629-667      6.10  366.64  0.00071       20.0%     45.56
  WD15:  Seg 59   682-720      7.01  404.08  0.00022       17.5%     56.85
  WD16:  Seg 63   721-760      6.95  401.65  0.00024       27.5%     54.90

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-66     -NH-----V-SEALL-------QGQA-PT---------PHVLVDR------EAS----------GAGDAP------R--ETAGSSWT
   WD 2   67-111    PAERPSPHS-HMSEW-------SLRS-GK---------AGLPTRP------DSY----------KHFTPR------Y--KTSPRVKS
   WD 3  121-159    -RL-----R-LKAIV-------GYNGNGR---------ANMVWRP------DTG----------FFAYTC---------GRLVVVED
   WD 4  162-206    -SG-----T-QRHWL-------GHSQ-EI---------STLALNQ------DGQ----------ILASASCCGNTAA--RCQIRIWD
   WD 5  210-250    -GL-----C-RHLLS-------HHDT-AV---------QALAFSP------DDE----------FLVTLG------DYADRNLALWS
   WD 6  251-291    MAT-----YELLSST-------RLLE-PV---------HGVAFNP------WDA----------NELICV------G--TNAITFWL
   WD 7  295-341    -HG-----A-DTCFQ-------VHRE-PIPEELGASELTSLCYGA------SP-----------LLYCGS------S--SGQVCVWD
   WD 8  345-381    -GH-----C-FLAWE-------ADDG-EI---------GVLLCS--------GS----------RLISGS------N--TKRLRLWA
   WD 9  391-437    KGS-----S-ARSSSVFMERELTLDG-AV---------VSASFDS------GMD----------MGVVGT------T--AGTIWYIS
   WD10  441-479    -GT-----S-TRLIS-------GHRT-KV---------NEVVFSP------GES----------HCATCG------E--DGSVRVWS
   WD11  483-527    -ME-----L-VIQFQ-------VLNQ-SC---------LCLAWTPPSCELPEQQ----------QVVAGY------S--DGTLRVFS
   WD12  531-569    -TA-----M-ELKMH-------PHRT-AL---------TAIAFST------DGQ----------TILSGD------K--DGLVAISH
   WD13  573-621    -GM-----T-FRVLS-------DHRG-AP---------ISAIQST------SKEYGDLGVEGVELWLAAS------G--DQRVSIWV
   WD14  629-667    -CE-----L-LEWLS-------FPAP-AV---------SEAPGLL------PPS----------LAAFCP------W--DKAILVCV
   WD15  682-720    -QK-----Q-VIQKT-------PLPF-FA---------MSLSLSP------GSQ----------LMVVGF------A--ECMMRLLD
   WD16  721-760    CAS----GT-AQDLE-------GHDD-SV---------HLCRFTP------SGR----------LLFTAA------H--N-EILVWE

   WD40 Template    TGE-----C-LRTLS-------GHTS-GV---------TSVSFSP------DGK----------RLVSGS------E--DGTIKVWD