Input parameters:

  Query = ENSMUSP00000080592 (Len=1249)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000080592, Len=1249):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTVVAQALHVFGLRPHVTNNVFFFDEQIIIFPSGNHCVKYNIDQKWQKFIAGSDKSQGMLALAISPNRRYLAISETVQE 80  
WD40-rpts                                                  (___________________WD 1____________

Query       81 KPAVTIYELSSIPCRKRKVLNNFDFQVQKFTSMAFSPDSKYLLTQTSPPDSNLVYWLWEKQKVMAIIKADSQNNPIYQVS 160 
WD40-rpts      _______)(______________________WD 2_____________________)  (__________________WD

Query      161 ISSQDNSQVCITGSGVFKLLRFAEGTLKQINFQRGESSNYLAHAWVSEDRVIVGTDTGKLFLFESGDQRWETSIMVKEST 240 
WD40-rpts       3__________________)  (__________________WD 4__________________)   (___________

Query      241 SSRSLEVIQESESLIEFPPLSSPVSSVERMDITTNTQQQAMPQVFAIAAYSKGFACSAGPGRVLLFEKVEEKDFYRESRE 320 
WD40-rpts      ______WD 5________________)                                                     

Query      321 IRIPTDQQSNDPSQSDKQDVLCLCFSPSEETLIASTNKNQLYSITMSLTEISKGEAAHFEYLLYPLHSASITGLDTCIRK 400 
WD40-rpts            (_________________WD 6________________) (______________________WD 7_______

Query      401 PLIATCSLDRSVRIWNYESNTLELYKEYQEEAYTVSLHPSGHYIVVGFADKLRLMNLLIDDIRPFKEYSVRGCKECSFSN 480 
WD40-rpts      _______________)  (________________WD 8________________)  (_________________WD 9

Query      481 GGHLFAAVNGNVIHIFTTTSLENINILKGHTGKIRSLVWNLDDSKLVSAGTDGAVYEWNLSTGKRETECVLKSCSYNSVT 560 
WD40-rpts      ________________)   (_________________WD10________________)   (_________________

Query      561 TSPDAKVIFAVGSDQTLKEISDSLILREIPAFDVIYTSITISHSGRMIFVGTSVGTIRAMKYPLSLQKEYNEYQAHAGPV 640 
WD40-rpts      WD11________________)(_________________WD12_________________)     (_____________

Query      641 MKMLLTFDDQFLLTVGEDGCLFTWKVFDKDGRGIKREREVGFAEEVLVTKTDMEEKAQIMLELKTRVEELKMENEYQLRL 720 
WD40-rpts      ____WD13________________)                                                       

Query      721 KDMNYTEKIKELTDKFIQEMESLKTKNQVLKTEKEKQDISHRERLEELVDKQTRELQDLECCNNQKLLLEYEKYQELQLK 800 
WD40-rpts                                                                                      

Query      801 SQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTGLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYERK 880 
WD40-rpts                                                                                      

Query      881 LRDEKESNLRLKGETGIMRKKFSSLQKEIEERTNDIELLKSEQMKLQGIIRSLEKDIQGLKREIQERDETIQDKEKRIYD 960 
WD40-rpts                                                                                      

Query      961 LKKKNQELEKFKFVLDYKIKELKKQIEPRENEIKVMKEQIQEMEAELERFHKQNTQLELNITELLQKLRATDQEMRKEQQ 1040
WD40-rpts                                                                                      

Query     1041 KERDLEALVRRFKTDLHNCVAYIQEPGLLKEKIRGLFEKYVQRADMVEIAGLNSDLQQEYARQREHLERNLATLKKKVIK 1120
WD40-rpts                                                                                      

Query     1121 EGELHRTDYVRIMQENVSLIKEINELRRELKLTRSQIYDLESALKVSKKTRSQEVPESVISKDVVGSTSTMRLNEQEETG 1200
WD40-rpts                                                                                      

Query     1201 RIIEMQRLEIRRLRDQIQEQEQVPGFHTIAGVRLPSIVDSDVDFEVHTK 1249
WD40-rpts                                                       

13 WD40-repeats found in QUERY=ENSMUSP00000080592 (Len=1249):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    45-88       4.06  282.19  0.00976       15.0%     49.12
  WD 2:  Seg  9    89-137      4.70  308.85  0.00428       27.5%     45.77
  WD 3:  Seg 13   140-181      5.53  342.99  0.00148       15.0%     56.30
  WD 4:  Seg 17   184-225      5.03  322.29  0.00282       10.0%     43.54
  WD 5:  Seg 21   229-267      3.70  267.64  0.01530        5.0%      8.73
  WD 6:  Seg 26   327-365      4.24  289.65  0.00775       12.5%     36.42
  WD 7:  Seg 29   367-416      5.94  360.22  0.00087       12.5%     43.54
  WD 8:  Seg 32   419-456      4.61  304.90  0.00483       20.0%     48.23
  WD 9:  Seg 36   459-497      5.72  350.89  0.00116       15.0%     41.92
  WD10:  Seg 39   501-539      8.65  471.93  2.7e-05       32.5%     50.41
  WD11:  Seg 43   543-581      5.62  346.75  0.00132       25.0%     45.21
  WD12:  Seg 47   582-621      7.10  408.14  0.00020       25.0%     51.96
  WD13:  Seg 50   627-665      3.26  249.52  0.02669       17.5%     32.25

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-88     QK------WQK--FI----------AG--SDKSQGMLALAISPNRRYLAI----SETVQE--KPAVTIYE
   WD 2   89-137    LSSIPCRKRKV--LN----------NF--DFQVQKFTSMAFSPDSKYLLT----Q---TSPPDSNLVYWL
   WD 3  140-181    KQ-------KV--MA----------IIKADSQNNPIYQVSISSQDNSQVC----I---TG--SGVFKLLR
   WD 4  184-225    EG-------TLKQIN----------FQ--RGESSNYLAHAWVSEDRVIVG----T---DT--GKLFLFES
   WD 5  229-267    -R-------WE--TS----------IM--VKESTSSRSLEVIQESESLIE----F---PP--LSSPVSSV
   WD 6  327-365    -Q-------QS--ND----------PS--QSDKQDVLCLCFSPSEETLIA----S---TN--KNQLYSIT
   WD 7  367-416    SL-------TE--ISKGEAAHFEYLLY--PLHSASITGLDTCIRKPLIAT----C---SL--DRSVRIWN
   WD 8  419-456    -S-------NT--LE----------LY--KEYQEEAYTVSLHPSGHYIVV----G---FA--D-KLRLMN
   WD 9  459-497    ID-------DI--RP----------FK--EYSVRGCKECSFSNGGHLFAA----V---N---GNVIHIFT
   WD10  501-539    -L-------EN--IN----------IL--KGHTGKIRSLVWNLDDSKLVS----A---GT--DGAVYEWN
   WD11  543-581    -G-------KR--ET----------EC--VLKSCSYNSVTTSPDAKVIFA----V---GS--DQTLKEIS
   WD12  582-621    DS-------LI--LR----------EI--PAFDVIYTSITISHSGRMIFV----G---TS--VGTIRAMK
   WD13  627-665    -Q-------KE--YN----------EY--QAHAGPVMKMLLTFDDQ----FLLTV---GE--DGCLFTWK

   WD40 Template    TG-------EC--LR----------TL--SGHTSGVTSVSFSPDGKRLVS----G---SE--DGTIKVWD