WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000080857 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000080857 (Len=2851) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000080857, Len=2851): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASEDNRAPSRPPTGDDGGGGGKEETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDL 80
WD40-rpts
Query 81 EMNFIIQEGESIMCMVELLEKCDVTCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLA 160
WD40-rpts
Query 161 SYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIARWPYQNGFTFHTWLRMD 240
WD40-rpts
Query 241 PVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYV 320
WD40-rpts
Query 321 NGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSDALNAAQIFAIYQLGLGYKGTFKFKAESDLFL 400
WD40-rpts
Query 401 AEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLF 480
WD40-rpts
Query 481 AQLDYKQYLSDEVDLTICTTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQN 560
WD40-rpts
Query 561 GMPLLKQLCDHILLNPAVWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKG 640
WD40-rpts
Query 641 LDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDQRNG 720
WD40-rpts
Query 721 LRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVI 800
WD40-rpts
Query 801 HKQHPDPDSTVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKN 880
WD40-rpts
Query 881 SDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREEQRKGDEETGPCSSSLVPEGTG 960
WD40-rpts
Query 961 ATRGVDVSVGSQHEDRKDSPISPHFTRNSDENSSIGRASSIDSASNTELQTHDMSSDEKKVERENQELLDQATVEETATN 1040
WD40-rpts
Query 1041 GAKDDLETSSDAAEPVTINSNSLEPGKDTVTISEVSASISSPSEEDAAEMPELLEKSGVEEEEDDDYVELKVEGSPTEEA 1120
WD40-rpts
Query 1121 GLPTELQGEGLSVAASEGREEPDMCGHGCEVQVEAPITKIHNDPETTDSEDSRFPTVATAGSLATSSEVPVPQATVQSDS 1200
WD40-rpts
Query 1201 HEMLDGGMKATNLAGETESVSDCADNVSEAPATSEQKITKLDVSSVASDTERFELKASTSTEAPQPQRHGLEISRQQEQT 1280
WD40-rpts
Query 1281 AQGTAPDAVDQQRRDSRSTMFRIPEFKWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQ 1360
WD40-rpts
Query 1361 VMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQC 1440
WD40-rpts
Query 1441 LRLVCAVAVRNCLECQQHSQLKARGDTAKSSKTIHSLIPMGKSAAKSPVDIVTGGISPVRDLDRLCKTWTLIGRAVVFRD 1520
WD40-rpts
Query 1521 IEDSKQAQFLALAVVYFISVLMVSKYRDILEPQDERHSQSLKETSSDNGNASLPDAENTPAEFSSLTLSSVEESLEGTSC 1600
WD40-rpts
Query 1601 TRRRDSGLGEETASGLGSGLSVASPAAPLGVSAGPDAISEVLCTLSLEVNKSQETRIDGGNELDRKVTPSVPVSKNVNVK 1680
WD40-rpts
Query 1681 DILRSLVNMPADGVTVDPALLPPACLGALGDLSVDPPMQFRSFDRSVIIATKKSSVLPSALTTSAPSSAVSVVSSVDPTH 1760
WD40-rpts
Query 1761 ASDTGGESPGSRSPCKTALSCQLAPSHKPAAHMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSL 1840
WD40-rpts
Query 1841 VCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLC 1920
WD40-rpts
Query 1921 AQYSADKREEEKMCDHLIRAAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRFVRNPLG 2000
WD40-rpts
Query 2001 STHPEATLKTAVEHAADEDILAKGKQSIKSQALGNQNSENEALLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVV 2080
WD40-rpts
Query 2081 VKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPAT 2160
WD40-rpts
Query 2161 VKKVVNYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITN 2240
WD40-rpts
Query 2241 YESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGK 2320
WD40-rpts
Query 2321 FDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRLALE 2400
WD40-rpts
Query 2401 SEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSA 2480
WD40-rpts
Query 2481 MQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2560
WD40-rpts
Query 2561 PLIACGTGTHRRQVTDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIG 2640
WD40-rpts (___________________WD 1_
Query 2641 GNCYILSGSRDATLLLWYWNGKSSGIGDNPGGETATPRAILTGHDYEITCAAVCAELGLVLSGSQEGPCLIHSMNGDLLR 2720
WD40-rpts _________________) (_________________WD 2________________)
Query 2721 TLEGPENCLKPKLIQASREGHCVIFYENGCFCTFSVNGKLQATVETDDHIRAIQLSRDGQYLLTGGDNGVVIVRQVSDLK 2800
WD40-rpts (_________________WD 3________________) (_
Query 2801 QLFAYPGCDAGIRAMALSFDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY 2851
WD40-rpts ________________WD 4________________)
 4 WD40-repeats found in QUERY=ENSMUSP00000080857 (Len=2851): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 46 2616-2658 5.54 343.43 0.00146 30.0% 54.58 WD 2: Seg 50 2675-2713 3.40 255.03 0.02254 20.0% 54.68 WD 3: Seg 58 2757-2795 4.44 297.99 0.00599 22.5% 55.32 WD 4: Seg 61 2799-2837 3.41 255.56 0.02218 22.5% 48.61Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2616-2658 -GKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWY WD 2 2675-2713 -ATPRAILTGHDYEITCAAVCAE----LGLVLSGSQEGPCLIHS WD 3 2757-2795 NGKLQATVE-TDDHIRAIQLSRD----GQYLLTGGDNGVVIVRQ WD 4 2799-2837 -LKQLFAYPGCDAGIRAMALSFD----QRCIISGMASGSIVLFY WD40 Template TGECLRTLSGHTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |