Input parameters:

  Query = ENSMUSP00000083711 (Len=934)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000083711, Len=934):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNRVSSDPVAIPDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSMPSKGQPSLRE 80  
WD40-rpts                                                                                      

Query       81 AISMSCITNGSGISRKQNHTSSVSIARKETLSSAAKSIKRPPTAEKSHNSWENSDDSRNKLMKTVSTSKLISKVIKNADK 160 
WD40-rpts                                                                                  (___

Query      161 HKDVIVNQAKMSTREKNSQEGEYIKMFMRGRPITMFIPSDVDNYDDIRTELPPEKLKLEWVYGYRGKDCRANVYLLPTGE 240 
WD40-rpts      __________________________WD 1_____________________________)                    

Query      241 IVYFIASVVVLFNYEERTQRHYLGHTDCVRCLAVHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLTTLHVIGLGTFE 320 
WD40-rpts                   (_______________________WD 2______________________)(_______________

Query      321 RGVGCLDFSKADSGVHLCVIDDSNEHMLTVWDWQKKSKIAEIKTTNEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSL 400 
WD40-rpts      ______WD 3_____________________)   (_________________WD 4________________)(_____

Query      401 TRKQGIFGKYEKPKFVQCLAFLGNGDVLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNGML 480 
WD40-rpts      _______________WD 5____________________)               (_________________WD 6___

Query      481 LTGGGKDRKIILWDHDLNLEREIEVPDQYGTIRAVAEGRAEQFLVGTSRNFILRGTFNDGFQIEVQGHTDELWGLATHPF 560 
WD40-rpts      _____________)(___________________WD 7__________________)(_________________WD 8_

Query      561 KDLLLTCAQDRQVCMWNSVEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRDLVSIHTDGNEQLSVMRY 640 
WD40-rpts      ________________)(__________________WD 9_________________)   (_________________W

Query      641 SVDGTLLAVGSHDNFIYLYTVLENGRKYSRYGKCTGHSSYITHLDWSPDNKHIMSNSGDYEILYWDIENGCKLIRNRSDC 720 
WD40-rpts      D10________________)       (_________________WD11________________)              

Query      721 KDIDWTTYTCVLGFQVFGVWPEGSDGTDINALVRSHNRRVIAVADDFCKVHLFQYPCSKAKAPSHKYSAHSSHVTNVSFT 800 
WD40-rpts                  (__________________WD12__________________)      (_________________WD

Query      801 HNDSHLISTGGKDMSIIQWKLVEKLPVPQNEVITDASVTKTPASSSETARPSNSPPLPPSLPLTGTAEEESRMGSSPTLV 880 
WD40-rpts      13_________________)                                                            

Query      881 ENSLEQIAEPSEEQSEWGSEDLGVVIDEEPASELSETQGATELPEEERGITPLC 934 
WD40-rpts                                                            

13 WD40-repeats found in QUERY=ENSMUSP00000083711 (Len=934):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   157-220      3.00  238.69  0.03715        7.5%      8.46
  WD 2:  Seg 10   254-304      6.70  391.30  0.00033       35.0%     53.46
  WD 3:  Seg 14   305-352      5.85  356.39  0.00098       22.5%     42.59
  WD 4:  Seg 18   356-394      7.29  415.90  0.00015       15.0%     56.47
  WD 5:  Seg 22   395-440      5.21  329.99  0.00222       17.5%     45.81
  WD 6:  Seg 26   456-494      7.62  429.25  0.00010       25.0%     51.84
  WD 7:  Seg 30   495-537      5.47  340.62  0.00160       12.5%     52.39
  WD 8:  Seg 34   538-577      8.90  482.21  2.0e-05       17.5%     56.13
  WD 9:  Seg 38   578-618      6.70  391.56  0.00033       22.5%     57.89
  WD10:  Seg 42   622-660      7.85  438.83  7.6e-05       20.0%     57.00
  WD11:  Seg 46   668-706      8.58  469.27  2.9e-05       35.0%     51.89
  WD12:  Seg 52   733-774      5.68  349.46  0.00121        2.5%     52.54
  WD13:  Seg 56   781-820      6.46  381.55  0.00045       32.5%     48.14

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  157-220    NA-------D-K----HKD--VIVNQAKMSTREKNSQEGEYIKMFMRGRPITMFIPSDVD-NYDDI----RTELPPEK----------LKLEW
   WD 2  254-304    YE-------ERT----QRH--Y---------------L---------GHTDCVRCLAVHP-DKIRI----ATGQIAGVDKDGRPLQPHVRVWD
   WD 3  305-352    SV-------S-LTTLHVIG--L---------------G---------TFERGVGCLDFSK-ADSGVHLCVIDDSNEHM----------LTVWD
   WD 4  356-394    -K-------S-K----IAE--I---------------K---------TTNEVVLAVEFHP-TDANT----IITCGKSH----------IFFWT
   WD 5  395-440    WSGNSLTRKQ-G----IFG--K---------------Y---------EKPKFVQCLAFLG-NGDVL----TGDS-GGV----------MLIWS
   WD 6  456-494    -Y-------Q-I----NRQ--I---------------K---------AHDGSVFTLCQMR-NGMLL----TGGGKDRK----------IILWD
   WD 7  495-537    HD----LNLE-R----EIE--V---------------P---------DQYGTIRAVAEGR-AEQFL----VGTSRNFI----------LRGTF
   WD 8  538-577    ND-------G-F----QIE--V---------------Q---------GHTDELWGLATHP-FKDLL----LTCAQDRQ----------VCMWN
   WD 9  578-618    SV-------EHR----LEW--T---------------R---------LVDEPGHCADFHP-SGTVV----AIGTHSGR----------WFVLD
   WD10  622-660    -R-------D-L----VSI--H---------------T---------DGNEQLSVMRYSV-DGTLL----AVGSHDNF----------IYLYT
   WD11  668-706    -Y-------S-R----YGK--C---------------T---------GHSSYITHLDWSP-DNKHI----MSNSGDYE----------ILYWD
   WD12  733-774    GF-------Q-V----FGVWPE---------------G---------SDGTDINALVRSH-NRRVI----AVADDFCK----------VHLFQ
   WD13  781-820    -K-------A-P----SHK--Y---------------S---------AHSSHVTNVSFTHNDSHLI----STGGKDMS----------IIQWK

   WD40 Template    TG-------E-C----LRT--L---------------S---------GHTSGVTSVSFSP-DGKRL----VSGSEDGT----------IKVWD