Input parameters:

  Query = ENSMUSP00000084708 (Len=229)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000084708, Len=229):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVASFLLSKENQPEDRGTPTKKEHQKAWSLNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRY 80  
WD40-rpts                                                     (_______________WD 1_____________

Query       81 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAWIKEGNYLAVGTSN 160 
WD40-rpts      _)   (________________WD 2________________)(___________________WD 3_____________

Query      161 AEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSRLWHGVPGSPISWQQEEEPVTGTFAFGTSAQGPV 229 
WD40-rpts      ______)   (_________________WD 4________________)                    

4 WD40-repeats found in QUERY=ENSMUSP00000084708 (Len=229):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    48-82       4.57  303.59  0.00504       17.5%     16.68
  WD 2:  Seg  5    86-123      6.72  392.34  0.00032       12.5%     47.10
  WD 3:  Seg  9   124-167      7.99  444.77  6.3e-05       22.5%     57.18
  WD 4:  Seg 13   171-209      4.75  311.00  0.00400       20.0%     51.96

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-82     -GK----PQNAPEGYQNRL-KVLYSQK---ATPGSSRKTCRYIP
   WD 2   86-123    -DR----ILDAPEIRNDYYLNLVDWSSGNVLAVAL-DNSVYLWN
   WD 3  124-167    AGSGDILQLLQMEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWD
   WD 4  171-209    -QK----RLRNMTSHSARVSSLSWNSYILSRLWHGVPGSPISWQ

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD