Input parameters:

  Query = ENSMUSP00000085325 (Len=907)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000085325, Len=907):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDTCGVGYVALGEADPVGSMIVVDSPGQEELSQLDVKASETSGVEASIEMSLPPPLPGFEDSSDRRLPPDQESLTRLEQQ 80  
WD40-rpts                                                                                      

Query       81 DLSSEMSKVSNTRASKPSGRRGGRTARGAKRPQQRKPPSTPLVPGLLDQSNPLSTPMPKKRSQKSKGDLLLLKLSKGLDQ 160 
WD40-rpts                                                                                      

Query      161 PESPHPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPPLSGPKSPKVSSPTKPKKTRQASSQGEEDGSAR 240 
WD40-rpts                                                                                      

Query      241 DEDFVLQVEGEDEEESEAPSENSSDPEPVAPRSTPRGPAAGKQKPHCRGMAPNGLPNYIMAPVWKCLHLTKDLREQHHSF 320 
WD40-rpts                                                                                      

Query      321 WEFAEWIPVAWKWQLLSELEAAPYLPQEEKSPLFSVQREGIPEDGTIYRINRFSSITAHPERWDVSFFTGGPLWALDWCP 400 
WD40-rpts                                                                                      

Query      401 VPEGSAASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDSGCIWDLKFCPSGAWEHP 480 
WD40-rpts                                                                   (__________________

Query      481 ETLRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAMKPAIYKVQCLATLQVGSVQASDPSECGQCLSLAWMP 560 
WD40-rpts      ___WD 1____________________)                               (__________________WD

Query      561 TRPHHHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANSHFLVSAGSDRKIKFWDLR 640 
WD40-rpts       2_________________)(__________________________WD 3__________________________)  

Query      641 RPYEPINCIKRFLSTELSWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTVAAGD 720 
WD40-rpts                                                        (_________________WD 4________

Query      721 ISGELIAAILPDMASNPINVKKPAERRFPIYKADLIPYQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQDTDLS 800 
WD40-rpts      ________)                                                                       

Query      801 SFHNLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLTSPLAHRVQLESRAN 880 
WD40-rpts                                                                                      

Query      881 FNAMFQPSFPTEGPGFSPSSHCLLPNP 907 
WD40-rpts                                 

4 WD40-repeats found in QUERY=ENSMUSP00000085325 (Len=907):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   462-508      3.34  252.65  0.02425       17.5%     31.52
  WD 2:  Seg 13   540-580      5.06  323.79  0.00269       17.5%     31.22
  WD 3:  Seg 16   581-638      4.52  301.41  0.00539       25.0%     49.39
  WD 4:  Seg 23   691-729      5.40  337.53  0.00176       17.5%     48.23

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  462-508    DSG-----------------CIWDLKFCPSGAWEHPETLRKAPLLP-RL--GLLALACSDGKVLLFS
   WD 2  540-580    -GS-----------------VQASDP-------SECGQCLSLAWMP-TRPHHHLAAGYYNGMVVFWN
   WD 3  581-638    LPTNSPLQRIRLSDGSLKLYPFQCFL-------AHDQAVRTIQWCKANS--HFLVSAGSDRKIKFWD
   WD 4  691-729    -GF-----------------KAYFTA-------PRKGTVWSLSGSD-WL--GTVAAGDISGELIAAI

   WD40 Template    TGE-----------------CLRTLS-------GHTSGVTSVSFSP-DG--KRLVSGSEDGTIKVWD