Input parameters:

  Query = ENSMUSP00000087966 (Len=288)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000087966, Len=288):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRFKVSKFRHMEARPSRREAWISDIRAVTTPTCGNHIKSSCSLIAFNSDRPGVLGVISLEGHEENKRHVTYLGCHSDLV 80  
WD40-rpts                         (___________________WD 1__________________)(_________________

Query       81 TDLDFSPFDDFLLASGSADRTIKLWRLSGTGEALPSVPGVVLGPEELPVEVLQFHPTVDGVLVSTAGKTVKVWDVAKQQP 160 
WD40-rpts      __WD 2___________________)         (_________________WD 3________________)   (__

Query      161 LTELEAHKDLVQSAVWSRDGAIVGTACKDKQLRIFDPRARTQASQSTQAHENNRDIRLAWTGIQEHLVSTGFNQMREREA 240 
WD40-rpts      _______________WD 4________________)     (___________________WD 5_______________

Query      241 KLWDTRLFSSALASVTLDTSPGVSVRILALCRVAEHCQASSCLVEGSR 288 
WD40-rpts      ___)                                            

5 WD40-repeats found in QUERY=ENSMUSP00000087966 (Len=288):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-62       3.47  258.08  0.02053        7.5%     15.50
  WD 2:  Seg  5    63-106      8.32  458.51  4.1e-05       45.0%     53.32
  WD 3:  Seg  9   116-154      7.48  423.56  0.00012       22.5%     44.00
  WD 4:  Seg 12   158-196      8.68  473.06  2.6e-05       25.0%     55.26
  WD 5:  Seg 16   202-244      4.58  304.02  0.00497       17.5%     44.62

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-62     -EA---WISDIRAVTTP-TCGNHIKS-SCSLIAFNSDRPG----VLGVISLEG
   WD 2   63-106    HEENKRHVTYLGCHSDL-VTDLDFSPFDDFLLAS----GS----ADRTIKLWR
   WD 3  116-154    -SV---PGVVLGPEELP-VEVLQFHP-TVDGVLV----ST----AGKTVKVWD
   WD 4  158-196    -QQ---PLTELEAHKDL-VQSAVWSR-DGAIVGT----AC----KDKQLRIFD
   WD 5  202-244    --Q---ASQSTQAHENNRDIRLAWTG-IQEHLVS----TGFNQMREREAKLWD

   WD40 Template    TGE---CLRTLSGHTSG-VTSVSFSP-DGKRLVS----GS----EDGTIKVWD