Input parameters:
Query = ENSMUSP00000091135 (Len=1228)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000091135, Len=1228):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVDRLVDGCLDTNAQSLLSGLKGRILDAQPGALKSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNHQVLEQLRELEL 80
WD40-rpts
Query 81 ARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLRQQLRQDESRTHTPLVLFGPPGIGKTSLMCKLAQQVPELLGHKT 160
WD40-rpts
Query 161 VVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGLPLPPAQVLEAHSRVGHFFHTLLHTVSQRNFESLVLLLDSVDDLDSIC 240
WD40-rpts
Query 241 HSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQQTLKDPSTYWEVKALSGSQGQEFIQLLLAAEKRMLSPGQRDVLWASL 320
WD40-rpts
Query 321 PECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEAELKDVLSLDDE 400
WD40-rpts
Query 401 VLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSG 480
WD40-rpts
Query 481 AWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSSTVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEV 560
WD40-rpts
Query 561 LLDDFDMCAPHMNSPEVDLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQSWFRACPYPMLV 640
WD40-rpts
Query 641 PLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVEEQQVVHVLMGHTAEVKCVRVFAQGTLAIS 720
WD40-rpts (_________________WD 1________________) (_________________WD 2______
Query 721 ASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQSWDLHVDERNNVVYSTSGARINMWNLETSKLVFCITGDVSDPWVCVA 800
WD40-rpts __________) (___________________WD 3__________________) (_________________W
Query 801 LLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQLSSIKEETPTCAVSIQSRARLVAGFSSGSIALVSAGEDRLLEKLPEAV 880
WD40-rpts D 4_________________)(____________________WD 5___________________) (________
Query 881 GFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRFMASDLEHEDMVETAVLGPENNLIITGSRDALIQVWSLSEQGTLLNVL 960
WD40-rpts ______WD 6_____________) (_________________WD 7________________) (______
Query 961 EGVGAPVSLLVRGGTLVVSASRKSSSFKVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKVGDKNKVTIWDLAEGE 1040
WD40-rpts __________WD 8________________) (__________________WD 9_________________)(____
Query 1041 EQDCLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSENRLAIAYDNIVLVLDI 1120
WD40-rpts ______________WD10_________________) (_________________WD11_________________)
Query 1121 SPGDPCPAIEGPTYTFYTQLPETIVSVAVLADYRVVYGMSDGSLFLYDCACSKVFPLEAHGSRVSCVEVSHSEQLAVSGA 1200
WD40-rpts (_________________WD12________________) (_________________WD13________
Query 1201 EDALLCLWDLQACRGMFEMSYEVGGLDN 1228
WD40-rpts ________)
13 WD40-repeats found in QUERY=ENSMUSP00000091135 (Len=1228):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 651-689 8.97 485.22 1.8e-05 40.0% 54.41
WD 2: Seg 13 693-731 8.99 486.22 1.7e-05 30.0% 55.17
WD 3: Seg 17 736-778 5.23 330.56 0.00218 17.5% 39.75
WD 4: Seg 21 782-821 6.79 395.34 0.00029 17.5% 58.23
WD 5: Seg 25 822-866 6.00 362.65 0.00081 22.5% 48.08
WD 6: Seg 29 872-904 4.21 288.58 0.00801 15.0% 45.01
WD 7: Seg 32 911-949 7.97 443.83 6.5e-05 22.5% 51.12
WD 8: Seg 36 954-991 5.70 350.32 0.00118 25.0% 51.72
WD 9: Seg 40 995-1035 6.24 372.35 0.00060 12.5% 48.45
WD10: Seg 44 1036-1076 6.83 396.72 0.00028 17.5% 53.79
WD11: Seg 48 1080-1119 4.61 305.25 0.00478 20.0% 52.07
WD12: Seg 53 1130-1168 6.95 401.67 0.00024 25.0% 45.40
WD13: Seg 56 1171-1209 8.47 464.48 3.4e-05 32.5% 54.05
Multiple sequence alignment of 13 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 651-689 -G----P-LRATL--TGC--HKG-ITAIA----WSLEEK-LL--VVGTQDGAMVVWD
WD 2 693-731 -Q----Q-VVHVL--MGH--TAE-VKCVR----VFAQGT-LA--ISASKDHTLRLWS
WD 3 736-778 -Q----E-KVTIL--DGG--SQN-PTEPQSWDLHVDERN-NV--VYSTSGARINMWN
WD 4 782-821 -S----K-LVFCI--TGD--VSDPWVCVA----LLAAQG-LL--LALSKGGQVSLWS
WD 5 822-866 SAMGKLQ-EKHQL--SSI--KEE-TPTCA----VSIQSRARL--VAGFSSGSIALVS
WD 6 872-904 -------------LLEKL--PEA-VGFLV----VSEDDS-LL--VAGF-GRFVRIFL
WD 7 911-949 -H----R-FMASD--LEH--EDM-VETAV----LGPENN-LI--ITGSRDALIQVWS
WD 8 954-991 -G----T-LLNVL--EGV--GAP-V-SLL----VRGGTL-VV--SASRKSSSFKVWD
WD 9 995-1035 -T----K-KLQSP--TPF--LDR-TGLAA----VSHHGS-FVYFPKVGDKNKVTIWD
WD10 1036-1076 LA----EGEEQDC--LDT--SNE-VRCLE----VAEQAK-LL--FTGLVSGIVLVFP
WD11 1080-1119 -R----Q-DVLCI--PPPEARKA-VNCMS----LSKSEN-RL--AIAY-DNIVLVLD
WD12 1130-1168 EG----P-TYTFY--TQL--PET-IVSVA----VLADY--RV--VYGMSDGSLFLYD
WD13 1171-1209 -C----S-KVFPL--EAH--GSR-VSCVE----VSHSEQ-LA--VSGAEDALLCLWD
WD40 Template TG----E-CLRTL--SGH--TSG-VTSVS----FSPDGK-RL--VSGSEDGTIKVWD