Input parameters:

  Query = ENSMUSP00000092157 (Len=1217)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000092157, Len=1217):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKEIDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPHKMD 80  
WD40-rpts                                                                                      

Query       81 SKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQKDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMT 160 
WD40-rpts                             (_____________________WD 1_____________________)(________

Query      161 PGAKTQPPEDISCIAWNRQVQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240 
WD40-rpts      ____________WD 2____________________)   (____________________WD 3_______________

Query      241 IQMWDLRFASSPLRVLENHARGILAVAWSMADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLS 320 
WD40-rpts      ____)    (_________________WD 4_________________)   (_________________WD 5______

Query      321 AASFDGRISVYSIMGGSIDGLRQKQVDKLSSSFGNLDPFGTGQPLPPLQIPQQSAQHSIVLPLKKPPKWIRRPVGASFSF 400 
WD40-rpts      ___________)                                                                    

Query      401 GGKLVTFESVAVPLQQGAEQQRRQPVFISQVVTEKDFLNRSAQLQHAVQSQGFIGYCQKKIEASQTEFEKNVWSFLKVNF 480 
WD40-rpts                                                                                      

Query      481 EEDSRGKYLELLGYRKEDLGQKIALALNKVDGPDVALKDSDQVAQSDGEESPAAEEQLLGERIKEEKQECDFLPSAGGTF 560 
WD40-rpts                                                                                      

Query      561 NISVSGDIDGLITRALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLAQTQKKYFAKSQSKITRLITAVVMKNWREIV 640 
WD40-rpts                                                                                      

Query      641 ESCDLKNWREALAAVLTYAKPDEFSALCDLLGTRLEREGDSLLRTQACLCYICAGNVERLVACWTKAQDGSSPLSLQDLI 720 
WD40-rpts                                                                                      

Query      721 EKVVILRKAVQLTQALDTNTVGALLAEKMSQYASLLAAQGSIAAALAFLPDNTNQPNIVQLRDRLCKAQGKPVSGQESSQ 800 
WD40-rpts                                                                                      

Query      801 SPYERQPLSKGRPGPVAGHSQMPRVQTQQYYPHGENPPPPGFIMQGNVIPNPAAPLPTAPGHMPSQLPPYPQPQPYQPAQ 880 
WD40-rpts                                                                                      

Query      881 QYSFGTGGAAAYRPQQPVAPPASNAYPNTPYISPVASYSGQPQMYTAQQASSPTSSSAASFPPPSSGASFQHGGPGAPPS 960 
WD40-rpts                                                                                      

Query      961 SSAYALPPGTTGTPPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPSGDPQSQGLQQQPSTP 1040
WD40-rpts                                                                                      

Query     1041 GPLSSHASFPQQHLAGGQPFHGVQQPLAQTGMPPSFSKPNTEGAPGAPIGNTIQHVQALPTEKITKKPIPEEHLILKTTF 1120
WD40-rpts                                                                                      

Query     1121 EDLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTLSPTIINGLHSIARSIETRNYSEGLSVHTHIVSTSNFSETSA 1200
WD40-rpts                                                                                      

Query     1201 FMPVLKVVLSQASKLGV 1217
WD40-rpts                       

5 WD40-repeats found in QUERY=ENSMUSP00000092157 (Len=1217):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   104-151      5.13  326.59  0.00247       20.0%     39.76
  WD 2:  Seg 11   152-197      4.04  281.49  0.00997       17.5%     37.28
  WD 3:  Seg 14   201-245      3.56  261.61  0.01841       30.0%     49.86
  WD 4:  Seg 18   250-289      6.36  377.42  0.00051       30.0%     42.53
  WD 5:  Seg 21   293-332      5.33  334.93  0.00191       30.0%     52.98

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  104-151    -SK-----IIAGDKEVVIAQKDKHTGPV--RALDVNIFQT-NL-VASGANES---EIYIWD
   WD 2  152-197    LNNFATPMTPGAK--------TQPPEDI--SCIAWNR-QV-QHILASASPSG---RATVWD
   WD 3  201-245    -NE-----PIIKV--------SDHSNRMHCSGLAWHP-DVATQ-MVLASEDDRLPVIQMWD
   WD 4  250-289    -SS-----PLRVL--------ENHARGI--LAVAWSMADP-EL-LLSCGKDA---KILCSN
   WD 5  293-332    -GE-----VLYEL--------PTNTQWC--FDIQWCPRNP-AV-LSAASFDG---RISVYS

   WD40 Template    TGE-----CLRTL--------SGHTSGV--TSVSFSP-DG-KR-LVSGSEDG---TIKVWD