Input parameters:

  Query = ENSMUSP00000093059 (Len=569)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000093059, Len=569):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEGGGKEMNEIKTQFTTREGLYKLLQHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDRLCFNVGRELYFYIYKG 80  
WD40-rpts                  (_________________WD 1_________________)  (_____________WD 2________

Query       81 VRKAADLSKPIDKRIYKGTQPTCHDFNLLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPG 160 
WD40-rpts      _____)   (__________________WD 3__________________)          (________________WD

Query      161 SESLFLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQ 240 
WD40-rpts       4_______________)(___________WD 5___________)   (_________________WD 6_________

Query      241 DGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGHGHKSWVSVVAFDPYTTSVE 320 
WD40-rpts      _______)   (_________________WD 7________________)   (____________________WD 8__

Query      321 ESDPMEFSGSDEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARTH 400 
WD40-rpts      __________________)(___________________WD 9__________________)        (_________

Query      401 TNVMNATSPPAGSNGNSVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAIASGVSKFATLSLHDRKERHHEKDHKR 480 
WD40-rpts      _________WD10_________________)(________________WD11_______________)   (________

Query      481 NHSMGHISSKSSDKLNLVTKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWAR 560 
WD40-rpts      _________WD12________________)            (________________WD13_______________) 

Query      561 PGKVVSFNP 569 
WD40-rpts               

13 WD40-repeats found in QUERY=ENSMUSP00000093059 (Len=569):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       5.80  354.08  0.00105       10.0%     20.52
  WD 2:  Seg  4    55-86       3.45  257.00  0.02122       17.5%     35.92
  WD 3:  Seg  7    90-131      6.00  362.48  0.00081       15.0%     54.42
  WD 4:  Seg 12   142-178      5.20  329.48  0.00226       22.5%     44.21
  WD 5:  Seg 15   179-206      3.59  263.11  0.01758       10.0%     32.15
  WD 6:  Seg 18   210-248      9.02  487.20  1.7e-05       30.0%     54.19
  WD 7:  Seg 22   252-290      9.82  520.34  6.0e-06       37.5%     56.59
  WD 8:  Seg 26   294-339      6.89  399.13  0.00026       25.0%     43.18
  WD 9:  Seg 29   340-382      6.44  380.69  0.00046       22.5%     51.26
  WD10:  Seg 33   391-431      5.55  344.00  0.00144       12.5%     26.86
  WD11:  Seg 36   432-468      4.96  319.57  0.00307       17.5%     -10.88
  WD12:  Seg 38   472-510      4.13  285.29  0.00887       17.5%     24.69
  WD13:  Seg 41   523-559      5.47  340.44  0.00161       22.5%     44.64

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     IK-TQFTTREGLYK---LLQHSEYSR--PNR--VP-F-------NSQGSNPVRVSF
   WD 2   55-86     LN---------DQS---GNGDRLCFN--VGR--EL-Y-------FYIYKGVRKAAD
   WD 3   90-131    -P-IDKRIYKGTQPTCHDFNLLTATA--ESV--SL-L-------VGFSAGQVQLID
   WD 4  142-178    NE-ERL----IDKS---RVTCVKWVP--GSE--SLFL-------VAHSSGNMYLYN
   WD 5  179-206    -------------V---EHTCGTTAP--HYQ--LL-K-------QGESFAVHTCKS
   WD 6  210-248    -R-NPLLKWTVGEG---ALNEFAFSP--DGK--FL-A-------CVSQDGFLRVFN
   WD 7  252-290    -V-ELHGTMKSYFG---GLLCVCWSP--DGK--YI-V-------TGGEDDLVTVWS
   WD 8  294-339    -C-RVIARGHGHKS---WVSVVAFDP--YTT--SV-EESDPMEFSGSDEDFQDLLH
   WD 9  340-382    FGRDRANSTQSRLS---KRNSTDSRP--VSVTYRF-G-------SVGQDTQLCLWD
   WD10  391-431    -H-QPLSRARTHTN---VMNATSPPAGSNGN--SV-T-------TPGNSVPPPLPR
   WD11  432-468    ----SNSLPHSAVS---NAASKGSVM--DGA--IA-S-------GVSKFATLSLHD
   WD12  472-510    -R-HHEKDHKRNHS---MGHISSKSS--DKL--NL-V-------TKAKTDPAKTLG
   WD13  523-559    -L-EPLICKKIAHE---RLTVLVFLE--DC----I-V-------TACQEGFICTWA

   WD40 Template    TG-ECLRTLSGHTS---GVTSVSFSP--DGK--RL-V-------SGSEDGTIKVWD