Input parameters:

  Query = ENSMUSP00000094528 (Len=988)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000094528, Len=988):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSMPSKGQPSLREAISM 80  
WD40-rpts                                                                                      

Query       81 SCITNGSGISRKQNHTSSVSIARKETLSSAAKSGTEKKKEKPQGQREKKEDSHSNDQSPQIRASPSPQPSSQPLQINRQT 160 
WD40-rpts                                                                         (____________

Query      161 PESKSSAPIKSIKRPPTAEKSHNSWENSDDSRNKLMKTVSTSKLISKVIKNADKHKDVIVNQAKMSTREKNSQEGEYIKM 240 
WD40-rpts      _____WD 1________________)            (______________WD 2_____________)_________

Query      241 FMRGRPITMFIPSDVDNYDDIRTELPPEKLKLEWVYGYRGKDCRANVYLLPTGEIVYFIASVVVLFNYEERTQRHYLGHT 320 
WD40-rpts      __________WD 3___________________)                                 (____________

Query      321 DCVRCLAVHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGVHLCVIDDSNEH 400 
WD40-rpts      ___________WD 4______________________)(_____________________WD 5________________

Query      401 MLTVWDWQKKSKIAEIKTTNEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKPKFVQCLAFLGNGD 480 
WD40-rpts      _____)   (_________________WD 6________________)(____________________WD 7_______

Query      481 VLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNGMLLTGGGKDRKIILWDHDLNLEREIEVP 560 
WD40-rpts      _____________)               (_________________WD 8________________)(___________

Query      561 DQYGTIRAVAEGRAEQFLVGTSRNFILRGTFNDGFQIEVQGHTDELWGLATHPFKDLLLTCAQDRQVCMWNSVEHRLEWT 640 
WD40-rpts      ________WD 9__________________)(_________________WD10_________________)(________

Query      641 RLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRDLVSIHTDGNEQLSVMRYSVDGTLLAVGSHDNFIYLYTVLENGR 720 
WD40-rpts      __________WD11_________________)   (_________________WD12________________)      

Query      721 KYSRYGKCTGHSSYITHLDWSPDNKHIMSNSGDYEILYWDIENGCKLIRNRSDCKDIDWTTYTCVLGFQVFGVWPEGSDG 800 
WD40-rpts       (_________________WD13________________)                          (_____________

Query      801 TDINALVRSHNRRVIAVADDFCKVHLFQYPCSKAKAPSHKYSAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWKLVEKLP 880 
WD40-rpts      _____WD14__________________)      (_________________WD15_________________)   (__

Query      881 VPQNEVITDASVTKTPASSSETARPSNSPPLPPSLPLTGTAEEESRMGSSPTLVENSLEQIAEPSEEQSEWGSEDLGVVI 960 
WD40-rpts      _______________WD16_________________)                                           

Query      961 DEEPASELSETQGATELPEEERGITPLC 988 
WD40-rpts                                  

16 WD40-repeats found in QUERY=ENSMUSP00000094528 (Len=988):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   148-186      3.01  238.88  0.03694       12.5%     -5.76
  WD 2:  Seg  2   199-231      3.99  279.64  0.01056        5.0%     30.37
  WD 3:  Seg  5   230-274      3.01  238.96  0.03686        7.5%     15.62
  WD 4:  Seg 11   308-358      6.57  386.00  0.00039       32.5%     54.61
  WD 5:  Seg 15   359-406      5.89  358.07  0.00093       22.5%     43.87
  WD 6:  Seg 19   410-448      7.38  419.40  0.00014       15.0%     56.80
  WD 7:  Seg 23   449-494      5.21  329.70  0.00224       17.5%     45.55
  WD 8:  Seg 27   510-548      7.63  429.80  0.00010       25.0%     52.56
  WD 9:  Seg 31   549-591      5.39  337.32  0.00177       12.5%     53.85
  WD10:  Seg 35   592-631      8.90  482.11  2.0e-05       17.5%     55.79
  WD11:  Seg 39   632-672      6.65  389.22  0.00035       22.5%     57.68
  WD12:  Seg 43   676-714      7.87  439.67  7.4e-05       20.0%     58.01
  WD13:  Seg 47   722-760      8.58  469.17  3.0e-05       35.0%     51.28
  WD14:  Seg 53   787-828      5.64  347.80  0.00128        2.5%     51.98
  WD15:  Seg 57   835-874      6.56  385.76  0.00039       32.5%     47.92
  WD16:  Seg 60   878-917      3.81  272.18  0.01330       15.0%     10.09

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  148-186    -Q-------P-----S----SQP--LQINRQT-PESKSSAP-IKSIK----RPPT----------AEKSHNSWE
   WD 2  199-231    -------------------------VSTSKLI-SKVIKNAD-KHKDV----IVNQ----------AKMSTREKN
   WD 3  230-274    KN-------SQEGEYI----KMF--MRGRPIT-MFIPSDVD-NYDDI----RTEL----------PPEKLKLEW
   WD 4  308-358    YE-------E----RT----QRH--YLGHTDC-VRCLAVHP-DKIRI----ATGQIAGVDKDGRPLQPHVRVWD
   WD 5  359-406    SV-------S-----LTTLHVIG--LGTFERG-VGCLDFSK-ADSGVHLCVIDDS----------NEHMLTVWD
   WD 6  410-448    -K-------S-----K----IAE--IKTTNEV-VLAVEFHP-TDANT----IITC----------GKSHIFFWT
   WD 7  449-494    WSGNSLTRKQ-----G----IFG--KYEKPKF-VQCLAFLG-NGDVL----TGDS-----------GGVMLIWS
   WD 8  510-548    -Y-------Q-----I----NRQ--IKAHDGS-VFTLCQMR-NGMLL----TGGG----------KDRKIILWD
   WD 9  549-591    HD----LNLE-----R----EIE--VPDQYGT-IRAVAEGR-AEQFL----VGTS----------RNFILRGTF
   WD10  592-631    ND-------G-----F----QIE--VQGHTDE-LWGLATHP-FKDLL----LTCA----------QDRQVCMWN
   WD11  632-672    SV-------E----HR----LEW--TRLVDEP-GHCADFHP-SGTVV----AIGT----------HSGRWFVLD
   WD12  676-714    -R-------D-----L----VSI--HTDGNEQ-LSVMRYSV-DGTLL----AVGS----------HDNFIYLYT
   WD13  722-760    -Y-------S-----R----YGK--CTGHSSY-ITHLDWSP-DNKHI----MSNS----------GDYEILYWD
   WD14  787-828    GF-------Q-----V----FGVWPEGSDGTD-INALVRSH-NRRVI----AVAD----------DFCKVHLFQ
   WD15  835-874    -K-------A-----P----SHK--YSAHSSH-VTNVSFTHNDSHLI----STGG----------KDMSIIQWK
   WD16  878-917    -K-------L-----P----VPQ--NEVITDASVTKTPASS-SETAR----PSNS----------PPLPPSLPL

   WD40 Template    TG-------E-----C----LRT--LSGHTSG-VTSVSFSP-DGKRL----VSGS----------EDGTIKVWD