Input parameters:

  Query = ENSMUSP00000095066 (Len=359)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000095066, Len=359):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAKDEKRFNLALQINNFKASLVEFNKLVEQTTAQKKEERAGIFIPKEDSIDYDKFYTSVQQIFGPEVKNQDVKCFYRKL 80  
WD40-rpts                                                                                      

Query       81 CNNPDAAFDWCEIFGYFSTDEDSLTSQMDEENLVFLVSRKQRIVIAGSRRRDVIKCIVKVPQLDLLITASQKGLITVFNS 160 
WD40-rpts                                                   (______________WD 1______________) 

Query      161 QMRAQTSTNVTDTSWITGCDYLGQLKRIVATTERTIIVWDYKAQGSSQEHYFVIKPMDHCLLCVCVVPLPDQLCRDDILL 240 
WD40-rpts        (________________WD 2________________)                                        

Query      241 GDDGGFVNKFTVSSDDFGLKQAKTKKKLQTQVLDSKNFKSVKRKLHNDWVMKIRYIPALNCFGSCSLDSVHSLVLESLKR 320 
WD40-rpts                                        (__________________WD 3_________________)     

Query      321 LEDNLPVREFAMPRGANSFCYCGKANVIVTGGIGYGVIL 359 
WD40-rpts       (________________WD 4________________)

4 WD40-repeats found in QUERY=ENSMUSP00000095066 (Len=359):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   126-159      5.85  356.14  0.00099       20.0%     42.95
  WD 2:  Seg  5   163-200      5.79  353.64  0.00107       30.0%     51.24
  WD 3:  Seg 14   275-315      6.11  367.20  0.00070       15.0%     43.96
  WD 4:  Seg 18   322-359      4.14  285.60  0.00878       10.0%     33.96

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  126-159    AG-------SRRRDVIKCIVKVPQLDLLITASQKGLITVFN
   WD 2  163-200    -RAQ-TSTNVTDTSWITGCDYLGQLKRIVATT-ERTIIVWD
   WD 3  275-315    SKNFKSVKRKLHNDWVMKIRYIPALNCFGSCSLDSVHSLVL
   WD 4  322-359    EDNL-PVREFAMPRGANSFCYCGKANVIVTGGIGYGVIL--

   WD40 Template    TGEC-LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD