Input parameters:

  Query = ENSMUSP00000096048 (Len=416)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000096048, Len=416):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAARKGRSRTCETGEPMEAETCDPGTEGPSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNR 80  
WD40-rpts                                                                                      

Query       81 TELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPSPSEGSDDDEEDEDEEDEEEQKPQLELAMVPHYGGINRVRVSWL 160 
WD40-rpts                                                                       (______________

Query      161 GEEPVAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVH 240 
WD40-rpts      WD 1______________)                           (________________WD 2_____________

Query      241 LWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRRE 320 
WD40-rpts      __)(_____________________WD 3____________________)       (_________________WD 4_

Query      321 PFLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETDPGL 400 
WD40-rpts      _______________)      (_________________WD 5_________________)                  

Query      401 AALPQQLLFVHQGRKT 416 
WD40-rpts                      

5 WD40-repeats found in QUERY=ENSMUSP00000096048 (Len=416):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   146-179      3.56  261.87  0.01827       22.5%     41.25
  WD 2:  Seg 12   207-243      5.90  358.38  0.00092       20.0%     49.92
  WD 3:  Seg 16   244-290      6.94  401.50  0.00024       35.0%     47.72
  WD 4:  Seg 19   298-336      8.74  475.60  2.4e-05       37.5%     52.62
  WD 5:  Seg 23   343-382      7.47  423.26  0.00012       32.5%     53.50

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  146-179    --------------VPHYGGINRVRVSW-LGE-EPVAGVWSEKGQVEVFA
   WD 2  207-243    ----------IFSFAGHMGEGFALDWSP-RVPGR--LLTGDCQKNVHLWT
   WD 3  244-290    PTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDT-V--FASCSADASIRIWD
   WD 4  298-336    -AC------MLTTATAHDGDVNVISWSR-REP-F--LLSGGDDGALKVWD
   WD 5  343-382    -GS------PVATFKQHMAPVTSVEWHPQDSG-V--FAASGADNQITQWD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGK-R--LVSGSEDGTIKVWD