Input parameters:

  Query = ENSMUSP00000097605 (Len=632)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000097605, Len=632):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALLQSMGLTTDSPIVPPPM 80  
WD40-rpts                                                                                      

Query       81 SPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSVLQLHSDSDLGRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTA 160 
WD40-rpts                                                                                      

Query      161 QPKEDEEEEDDVATPKPPVEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFD 240 
WD40-rpts                                                                                      

Query      241 YSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPE 320 
WD40-rpts                                                                             (________

Query      321 YVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGK 400 
WD40-rpts      ___________WD 1___________________)           (_________________WD 2____________

Query      401 ICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHA 480 
WD40-rpts      ____)                                                      (____________________

Query      481 AVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASIS 560 
WD40-rpts      WD 3___________________)   (_________________WD 4_________________)(____________

Query      561 VEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA 632 
WD40-rpts      ________WD 5___________________)                                        

5 WD40-repeats found in QUERY=ENSMUSP00000097605 (Len=632):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   312-355      3.63  264.68  0.01676       17.5%     41.15
  WD 2:  Seg 11   367-405      4.99  320.72  0.00296       30.0%     45.98
  WD 3:  Seg 18   460-504      4.91  317.57  0.00327       22.5%     41.95
  WD 4:  Seg 21   508-547      4.49  300.17  0.00560       20.0%     52.63
  WD 5:  Seg 25   548-592      4.24  289.94  0.00768       15.0%     55.42

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  312-355    MKY-----KKTTPEYVFHCQSAVMSATFA--KFH------PNLV-VGGTYSGQIVLWD
   WD 2  367-405    TP--------LS----AAAHTHPVYCVNVVGTQN------AHNL-ISISTDGKICSWS
   WD 3  460-504    -AG-----ISEM----FEGHQGPITGIHC--HAAVGAVDFSHLF-VTSSFDWTVKLWT
   WD 4  508-547    -NK-----PLYS----FEDNSDYVYDVMW--SPT------HPALFACVDGMGRLDLWN
   WD 5  548-592    LNNDTEVPTASI----SVEGNPALNRVRW--THS------GREI-AVGDSEGQIVIYD

   WD40 Template    TGE-----CLRT----LSGHTSGVTSVSF--SPD------GKRL-VSGSEDGTIKVWD