Input parameters:
Query = ENSMUSP00000098957 (Len=907)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000098957, Len=907):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDTCGVGYVALGEADPVGSMIVVDSPGQEELSQLDVKASETSGVEASIEMSLPPPLPGFEDSSDRRLPPDQESLTRLEQQ 80
WD40-rpts
Query 81 DLSSEMSKVSNTRASKPSGRRGGRTARGAKRPQQRKPPSTPLVPGLLDQSNPLSTPMPKKRSQKSKGDLLLLKLSKGLDQ 160
WD40-rpts
Query 161 PESPHPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPPLSGPKSPKVSSPTKPKKTRQASSQGEEDGSAR 240
WD40-rpts
Query 241 DEDFVLQVEGEDEEESEAPSENSSDPEPVAPRSTPRGPAAGKQKPHCRGMAPNGLPNYIMAPVWKCLHLTKDLREQHHSF 320
WD40-rpts
Query 321 WEFAEWIPVAWKWQLLSELEAAPYLPQEEKSPLFSVQREGIPEDGTIYRINRFSSITAHPERWDVSFFTGGPLWALDWCP 400
WD40-rpts
Query 401 VPEGSAASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDSGCIWDLKFCPSGAWEHP 480
WD40-rpts (__________________
Query 481 ETLRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAMKPAIYKVQCLATLQVGSVQASDPSECGQCLSLAWMP 560
WD40-rpts ___WD 1____________________) (__________________WD
Query 561 TRPHHHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANSHFLVSAGSDRKIKFWDLR 640
WD40-rpts 2_________________)(__________________________WD 3__________________________)
Query 641 RPYEPINCIKRFLSTELSWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTVAAGD 720
WD40-rpts (_________________WD 4________
Query 721 ISGELIAAILPDMASNPINVKKPAERRFPIYKADLIPYQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQDTDLS 800
WD40-rpts ________)
Query 801 SFHNLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKPGPQADGRGGARYGSPWTSFGHVREGSAQSWHSGSMALWRAYQRA 880
WD40-rpts
Query 881 LAAHPWKVQVLTAGCLDQPTNKRWGWA 907
WD40-rpts
4 WD40-repeats found in QUERY=ENSMUSP00000098957 (Len=907):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 8 462-508 3.00 238.63 0.03722 17.5% 31.42
WD 2: Seg 13 540-580 4.42 297.18 0.00614 17.5% 32.36
WD 3: Seg 16 581-638 4.32 293.12 0.00696 25.0% 49.34
WD 4: Seg 23 691-729 5.14 327.16 0.00243 17.5% 49.57
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 462-508 DSG-----------------CIWDLKFCPSGAWEHPETLRKAPLLP-RL--GLLALACSDGKVLLFS
WD 2 540-580 -GS-----------------VQASDP-------SECGQCLSLAWMP-TRPHHHLAAGYYNGMVVFWN
WD 3 581-638 LPTNSPLQRIRLSDGSLKLYPFQCFL-------AHDQAVRTIQWCKANS--HFLVSAGSDRKIKFWD
WD 4 691-729 -GF-----------------KAYFTA-------PRKGTVWSLSGSD-WL--GTVAAGDISGELIAAI
WD40 Template TGE-----------------CLRTLS-------GHTSGVTSVSFSP-DG--KRLVSGSEDGTIKVWD