Input parameters:

  Query = ENSMUSP00000099130 (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000099130, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPESAPALSPGSADEEETILYDLLVNTEWPPETEVQLRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLV 80  
WD40-rpts                                                                                      

Query       81 RLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDL 160 
WD40-rpts                                      (_____________________WD 1____________________) 

Query      161 MGSELFVIAPASVFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSGHYPHGINT 240 
WD40-rpts       (___________________WD 2__________________) (__________________________WD 3____

Query      241 AIYHPGHRLLLVGGCETAELGISKAASCGLSAWRVLSGSPYYKQVTNGGDRVTEVPKTLGLLKLLSVKLSPRLGQEQDGI 320 
WD40-rpts      ______________________)                       (___________________________WD 4__

Query      321 FKMGLSPDGSLLAAIHFSGKLSIWAIPSLKQQGVWRQDEQPGYNELNPDWRLSPE 375 
WD40-rpts      ________________________)                              

4 WD40-repeats found in QUERY=ENSMUSP00000099130 (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   113-159      5.99  362.28  0.00082       22.5%     42.69
  WD 2:  Seg  9   162-204      4.76  311.23  0.00397       15.0%     20.35
  WD 3:  Seg 12   206-263      3.49  258.85  0.02005       17.5%     38.48
  WD 4:  Seg 18   287-345      7.17  410.80  0.00018       25.0%     40.51

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  113-159    AK-------------------DDFTSI------------------IGKCQVPKDPKPQWRRVAWSYDCTLL----AYAESTGTVRVFD
   WD 2  162-204    -G-------------------SELFVI------------------AP-------ASVFAGDLSYAIAGLVFLEYKASAQWSAELLVIN
   WD 3  206-263    RG-------------------ELRSYLVSVGTNQSYQESHSFSFSGH-------YPHGINTAIYHPGHRLL----LVGGCETAELGIS
   WD 4  287-345    NGGDRVTEVPKTLGLLKLLSVKLSPRL------------------GQ-------EQDGIFKMGLSPDGSLL----AAIHFSGKLSIWA

   WD40 Template    TG-------------------ECLRTL------------------SG-------HTSGVTSVSFSPDGKRL----VSGSEDGTIKVWD