WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000099772 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000099772 (Len=1501) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000099772, Len=1501): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKPEPRTLPPSPNWYCSRCSDAAPGGIFGFAARTSVFLVRVGPGAGASPGAPPFRVVGELVGHTERVSGFTFSHHPGQYN 80
WD40-rpts (__________________WD 1____
Query 81 LCATSSDDGTVKVWDVETKTVVTEHTLHQHTISALHWSPTVKDLIVSGDEKGVVFCYWLNRNDSQHLFTEPRTIFCLTCS 160
WD40-rpts ______________) (_________________WD 2________________) (_________________WD
Query 161 PHHENLVAIGYKDGIVVIIDISKKGEVIHRLRGHDDEIHSIAWCPLSGEDCLSISQEENSEEPDIPNGKLIAETPITKGC 240
WD40-rpts 3_________________) (_________________WD 4_________________)
Query 241 YLATGSKDQTIRIWSCSRGRGVMVLKLPFLKRRSGGVDPTVKERLWLTLHWPKNQPTQLVSSCFGGELLLWDLTQSWRRK 320
WD40-rpts (________________________WD 5________________________)
Query 321 YTLFSTSAEGHNHSRIVFNLCSLKTEDGKQLLLSTSMDRDVKCWDMATLECCWTLPSLGGFAYSLAFSPVDVGSLAIGVG 400
WD40-rpts (__________________WD 6_________________) (_________________WD 7__________
Query 401 DGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPNKEGCLAFGTDDGKVGLYDTCSNKPPQISSTYHKKTVYRLAWGP 480
WD40-rpts _______) (_________________WD 8_________________)(___________________WD 9_
Query 481 PVPPMSLGGEGDRPSLTLYSCGGEGVVLQHNPWKLSGEAFDINKLVRDTNSIRYKLPVHTEISWKGDGKVLALGNEDGSI 560
WD40-rpts _________________) (___________________WD10_______________
Query 561 EIFQVPNLRLLCTIQQHHKLVNAIVWHHEHGSRPELSCLLASGSNNAVIYVHNLKAVLESNPESPITITEPYRTLSGHTA 640
WD40-rpts ___) (____________________WD11____________________) (___________
Query 641 KITSLAWSPHHDGRLVSACYDGTAQVWDALREEPLFNFRGHRGRLLCVAWSPVDPECIYSGADDFCVYRWLTSMQDHSRP 720
WD40-rpts ______WD12_________________) (_________________WD13_________________)
Query 721 PQGKKCIELEKKRLSQFKPKLKKKKKPTLRLPVKQDSSVGNEDESVKENSGPAENGLSDQDGEEEAQEPELPPSPVVCVE 800
WD40-rpts
Query 801 PVSCTDICSGFEKSKVTVSSKATSLKKEPAKEKPEALLKKRKARSMLPLSTSLDHRSKEELHRDCLVLATATHAKELNED 880
WD40-rpts
Query 881 VSADLEERFHLGLFTDRATLYRMMETEGKGHLESGHPELFHQLMLWKGDLKGVLQAAAERGELTDSLVAVAPVAGYSVWL 960
WD40-rpts
Query 961 WAVEAFAKQLCFQDQYVKAASYLLSIHKVYEAVELLKSNHLYREAIAVAKARLRPEDPVLKELYLSWGSILERDGHYAIA 1040
WD40-rpts
Query 1041 AKCYLGATSAYDAAKVLARKGDAASLRTAAELAAIAGEHELAASLALRCAQELLLMKNWVGAQEALGLHESLQGQRLVFC 1120
WD40-rpts
Query 1121 LLELLCRHLEEKQPLEVRGPSSIYHQWATGSEGTLVQRVTGVWRSAFSVDTPEQCQAALQKLQDVKYPSATSNTPFRQLL 1200
WD40-rpts
Query 1201 LHVCHDLTLAMLSQQAAAWEEAVPALLQAVVRSYTSGNFTLMQEIYSAFLPGGCDHLRDKLGDLSPAMAAYKSLEAFCIY 1280
WD40-rpts
Query 1281 GQLYEVWWSLCGPGPESSVWVLSAESTVSDKQSKPEDSASAEDMEQPPGPGPRLSAESERLLSACKELFSERHASLQTSQ 1360
WD40-rpts
Query 1361 RTVAEVQETLAEMIRQHQKSQLCKATTNGPSRDEPSRDEPSQEAERAPSQPPSPTEERNAPVSLPELTRRLTEANERIAE 1440
WD40-rpts
Query 1441 FPESVKAWPFPDVLECCLVLLHIGSQCPDAVDPEMQQQAQELLHKYGHTRAYRRHCQSRHT 1501
WD40-rpts
 13 WD40-repeats found in QUERY=ENSMUSP00000099772 (Len=1501): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 54-95 7.00 403.83 0.00022 37.5% 56.81 WD 2: Seg 8 99-137 5.81 354.48 0.00104 12.5% 58.00 WD 3: Seg 12 141-180 5.17 328.35 0.00234 22.5% 53.16 WD 4: Seg 16 185-224 5.83 355.56 0.00101 27.5% 51.09 WD 5: Seg 22 259-312 4.26 290.57 0.00753 25.0% 42.97 WD 6: Seg 27 325-365 5.41 338.26 0.00172 22.5% 40.73 WD 7: Seg 30 369-408 7.26 414.57 0.00016 40.0% 57.33 WD 8: Seg 34 416-455 6.26 373.10 0.00058 25.0% 45.68 WD 9: Seg 37 456-498 5.74 351.74 0.00113 15.0% 49.58 WD10: Seg 43 522-564 7.28 415.42 0.00016 30.0% 49.18 WD11: Seg 46 568-613 5.69 349.75 0.00120 25.0% 57.88 WD12: Seg 50 629-668 8.42 462.68 3.6e-05 55.0% 52.87 WD13: Seg 54 672-711 6.86 398.13 0.00027 30.0% 56.38Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 54-95 -FR---VV-G---ELVGHTERVSGFTFSH---------------H-------PGQYN-LCA-TSSDDGTVKVWD WD 2 99-137 -KT---VV-T---EHTLHQHTISALHWSP---------------T-------V---K-DLI-VSGDEKGVVFCY WD 3 141-180 -RN---DS-Q---HLFTEPRTIFCLTCSP---------------H-------H---E-NLVAIGYKDGIVVIID WD 4 185-224 -GE---VI-H---RLRGHDDEIHSIAWCP--------------LS-------G---E-DCL-SISQEENSEEPD WD 5 259-312 -GR---GV-M---VLKLPFLKRRSGGVDPTVKERLWLTLHWPKNQ-------P---T-QLV-SSCFGGELLLWD WD 6 325-365 STS---AEGH---NHSRIVFNLCSLKTED---------------G-------K---Q-LLL-STSMDRDVKCWD WD 7 369-408 -LE---CC-W---TLPSLGGFAYSLAFSP--------------VD-------V---G-SLA-IGVGDGMIRVWN WD 8 416-455 -YD---VK-N---FWQGVKSKVTALCWHP---------------N-------K---EGCLA-FGTDDGKVGLYD WD 9 456-498 TCSNKPPQ-I---SSTYHKKTVYRLAWGP---------------P-------V---P-PMS-LGGEGDRPSLTL WD10 522-564 INK---LV-RDTNSIRYKLPVHTEISWKG---------------D-------G---K-VLA-LGNEDGSIEIFQ WD11 568-613 -LR---LL-C---TIQQHHKLVNAIVWHH---------------EHGSRPELS---C-LLA-SGSNNAVIYVHN WD12 629-668 -TE---PY-R---TLSGHTAKITSLAWSP---------------H-------H---DGRLV-SACYDGTAQVWD WD13 672-711 -EE---PL-F---NFRGHRGRLLCVAWSP--------------VD-------P---E-CIY-SGADDFCVYRWL WD40 Template TGE---CL-R---TLSGHTSGVTSVSFSP---------------D-------G---K-RLV-SGSEDGTIKVWD |
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