Input parameters:

  Query = ENSMUSP00000100028 (Len=701)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000100028, Len=701):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPSKQIRKQSISVTRGARRRDEDSGTDVGEGTDEWSQSKATVRPPDQLELTDAELKEEFTRILTANNPHAPQNIVRYSFK 80  
WD40-rpts                                                                                      

Query       81 EGTYKLIGFVNQMAVHFSQVGNLIPKDSDEGRRQHYRDEMVAGSQESIKVVTSEAENLEEEEEPKEGEGEAEAEAEAGSQ 160 
WD40-rpts                                                                                      

Query      161 TDIPAAAETTEKVIEEELMAPVQPKERKLTNQFNFSERASQTFNNPLRDRECQMEPPPRTNFSATANQWEIYDAYVDELE 240 
WD40-rpts                                                                                      

Query      241 KQEKTKEKEKAKTPVAKKTEKMAMRKLTSMESQSDDITKVTQAAKIVERMVNQNTYDDVAQDFKYYEDTADEYRDQEGTL 320 
WD40-rpts                                                                                      

Query      321 LPLWKFQNDKAKRLAVTALCWNPKYKDLFAVGHGSYDFMKQSRGMLLLYSMKNPSFPEYMFSSESGIMCLDVHVDHPYLV 400 
WD40-rpts                                                           (_________________WD 1_____

Query      401 VVGYYDGNVAIYNLKKPHSQPCFRSTSKSGKHTDPVWQVKWQKDDMDHNLNFFSVSSDGRIVSWTLVKSELVHIDIIKLK 480 
WD40-rpts      ____________)            (_________________WD 2_________________)               

Query      481 TEGSTTEIPEGLQLHTVGCGTAFDFHKEIDYMFLVGTEEGKIYKCSKSYSSQFLDTYDAHNMAVDAVLWNPYHTKVFMSC 560 
WD40-rpts                                                        (_________________WD 3________

Query      561 SSDWTVKIWDHTIKTPMFIYDLNSAVGDVAWAPYSSTVFAAVTTDGKAHVFDLAVNKYEAICNQPVVAKKKNKITHVQFN 640 
WD40-rpts      _________)(__________________WD 4__________________)(_____________________WD 5__

Query      641 PIHPIIIVGDDRGHIICLKLSPNLRKMPKEKKGQEVQKGPAVEIAKLDKLLNLVREVKTKT 701 
WD40-rpts      __________________)                                          

5 WD40-repeats found in QUERY=ENSMUSP00000100028 (Len=701):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   374-413      3.46  257.59  0.02083       17.5%     51.01
  WD 2:  Seg 13   426-465      4.08  283.34  0.00942       30.0%     43.61
  WD 3:  Seg 20   531-570      5.81  354.53  0.00104       35.0%     43.28
  WD 4:  Seg 23   571-612      3.21  247.26  0.02860       20.0%     45.68
  WD 5:  Seg 27   613-659      3.49  258.93  0.02000       17.5%     51.24

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  374-413    -PS-------FPEYMF-SSESGIMCLDVHV-D---HPYLV-VVGYYDGNVAIYN
   WD 2  426-465    TSK-----------SG-KHTDPVWQVKWQK-DDMDHNLNF-FSVSSDGRIVSWT
   WD 3  531-570    -SQ-------FLDTYD-AHNMAVDAVLWNPYH----TKVF-MSCSSDWTVKIWD
   WD 4  571-612    HTI-------KTPMFIYDLNSAVGDVAWAP-Y----SSTVFAAVTTDGKAHVFD
   WD 5  613-659    LAVNKYEAICNQPVVA-KKKNKITHVQFNP-I----HPII-IVGDDRGHIICLK

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSP-D----GKRL-VSGSEDGTIKVWD