Input parameters:

  Query = ENSMUSP00000100870 (Len=1166)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000100870, Len=1166):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFEGLDPGLAEFSPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEGVYSELHSVVAEVGVPVSVSH 80  
WD40-rpts                         (_________________WD 1_________________)         (___________

Query       81 FDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGGDDIRQIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHS 160 
WD40-rpts      ___WD 2_____________)                                                           

Query      161 VLLTDNSTLLVGGLQNHVLEIDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRSFKVEHEFDAFSGSLS 240 
WD40-rpts                               (________________WD 3_______________)   (______________

Query      241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANP 320 
WD40-rpts      ______WD 4____________________)                                                (

Query      321 ADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDSPEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPV 400 
WD40-rpts      _________________WD 5________________)                                          

Query      401 PLTTDALLSDWPAANSAPAPRRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDHEFDNFSQVTESPTGREE 480 
WD40-rpts                                                                                      

Query      481 EPLHTVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQKEFCLACELG 560 
WD40-rpts                                                                                      

Query      561 FLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEASGKGSLARLIQRWNRFILTQLHQDMQELEVPQAYRGAG 640 
WD40-rpts                                                                                      

Query      641 GSFCSSGDSIIGQLFSCEMENCSLCRCGSETVRASSTLLFTLSYPEGSIQTRNIRHLPDILVINCEVNSSKEADFWRLQA 720 
WD40-rpts                                                                                      

Query      721 EVAFKIAVKKYGGEMKSKEFALADRKELRSPEGFLCSSIEELKNVWLPFSIRMKMTKNKGLDVCNWADEHELSSLGAPSQ 800 
WD40-rpts                                                                                      

Query      801 WGPARAEEELGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKYEAVQFDMNWKV 880 
WD40-rpts                                                                                      

Query      881 PAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFIPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDG 960 
WD40-rpts                                                                                      

Query      961 TKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDI 1040
WD40-rpts                                                                                      

Query     1041 GVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTALQLYRKYLELSK 1120
WD40-rpts                                                                                      

Query     1121 NGTEPESFHKVLKGLYEKGRKMDWKVPEPESQTSPKNAAVFSVLAL 1166
WD40-rpts                                                    

5 WD40-repeats found in QUERY=ENSMUSP00000100870 (Len=1166):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    20-59       3.31  251.21  0.02534       15.0%      5.79
  WD 2:  Seg  2    69-101      2.88  233.81  0.04310       15.0%     42.14
  WD 3:  Seg 13   186-222      3.15  244.68  0.03095       17.5%     51.35
  WD 4:  Seg 17   226-271      3.31  251.18  0.02536       15.0%     33.12
  WD 5:  Seg 24   320-358      4.26  290.49  0.00755       12.5%     46.16

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-59     TLDPVLDAHLNPSLLQNVELDPE-------GVALEALPVQESVHIME
   WD 2   69-101    -------VAEVGVPVSVSHFDLH-------EEMLWVGSHGGHATSFF
   WD 3  186-222    -VQETQKYAVETPGVTIM--RQT-------NRFFFCGHTSGKVSLRD
   WD 4  226-271    -FKVEHEFDAFSGSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYD
   WD 5  320-358    -PADIFHVNPVGPLLMTFDVSAS-------KQALAFGDSEGCVHLWT

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD