Input parameters:

  Query = ENSMUSP00000102978 (Len=653)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000102978, Len=653):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGQQQLQAQHLSHGHGPPVPLTPHPSGLQPPGIPPLGG 160 
WD40-rpts                                                                                      

Query      161 SASLLALSSALSGQSHLAIKDDKKHHDAERHREKRGGTSNSLLVPDSLRGTDKRRNGPEFSSDIKKRKVDDKDNYDSDGD 240 
WD40-rpts                                                                                      

Query      241 KSDDNLVVDVSNEDPSSPHASPTHSPRENGIDKNRLLKKDASGSPASTASSGSSSSLKSKEVSLHEKANTPVLKSSTPTP 320 
WD40-rpts                                                                                      

Query      321 RSDMPTPGTSATPGLRPGLGKPPAMEPLVNQAAAGLRTPLAVPGPYPAPFGMVPHAGMNGELTSPGAAYAGLHSMSPQMS 400 
WD40-rpts                                                                                      

Query      401 AAAAAAAAAVVAYGRSPMVGFDPPPHMRVPSIPPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT 480 
WD40-rpts                                                                                (_____

Query      481 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 560 
WD40-rpts      ___________WD 1_______________)(_____________________WD 2____________________)  

Query      561 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 640 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      641 RSWDLREGNKSYQ 653 
WD40-rpts      ___)         

4 WD40-repeats found in QUERY=ENSMUSP00000102978 (Len=653):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   475-511      6.06  365.10  0.00075       30.0%     46.81
  WD 2:  Seg  9   512-558      7.24  413.88  0.00016       25.0%     46.50
  WD 3:  Seg 12   564-602      8.59  469.40  2.9e-05       30.0%     47.74
  WD 4:  Seg 16   606-644      9.88  522.74  5.6e-06       35.0%     51.62

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  475-511    -AR-------QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 2  512-558    ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD
   WD 3  564-602    -PR-------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 4  606-644    -QT-------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD