WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000103261 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000103261 (Len=2854) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000103261, Len=2854): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASEDNRAPSRPPTGDDGGGGGKEETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDL 80
WD40-rpts
Query 81 EMNFIIQEGESIMCMVELLEKCDVTCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLA 160
WD40-rpts
Query 161 SYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIARWPYQNGFTFHTWLRMD 240
WD40-rpts
Query 241 PVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYV 320
WD40-rpts
Query 321 NGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSDALNAAQIFAIYQLGLGYKGTFKFKAESDLFL 400
WD40-rpts
Query 401 AEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLF 480
WD40-rpts
Query 481 AQLDYKQYLSDEVDLTICTTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQN 560
WD40-rpts
Query 561 GMPLLKQLCDHILLNPAVWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKG 640
WD40-rpts
Query 641 LDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDQRNG 720
WD40-rpts
Query 721 LRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVI 800
WD40-rpts
Query 801 HKQHPDPDSTVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKN 880
WD40-rpts
Query 881 SDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREEQRKGDEETGPCSSSLVPEGTG 960
WD40-rpts
Query 961 ATRGVDVSVGSQHEDRKDSPISPHFTRNSDENSSIGRASSIDSASNTELQTHDMSSDEKKVERENQELLDQATVEETATN 1040
WD40-rpts
Query 1041 GAKDDLETSSDAAEPVTINSNSLEPGKDTVTISEVSASISSPSEEDAAEMPELLEKSGVEEEEDDDYVELKVEGSPTEEA 1120
WD40-rpts
Query 1121 GLPTELQGEGLSVAASEGREEPDMCGHGCEVQVEAPITKIHNDPETTDSEDSRFPTVATAGSLATSSEVPVPQATVQSDS 1200
WD40-rpts
Query 1201 HEMLDGGMKATNLAGETESVSDCADNVSEAPATSEQKITKLDVSSVASDTERFELKASTSTEAPQPQRHGLEISRQQEQT 1280
WD40-rpts
Query 1281 AQGTAPDAVDQQRRDSRSTMFRIPEFKWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQ 1360
WD40-rpts
Query 1361 VMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQC 1440
WD40-rpts
Query 1441 LRLVCAVAVRNCLECQQHSQLKARGDTAKSSKTIHSLIPMGKSAAKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFR 1520
WD40-rpts
Query 1521 DIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQDERHSQSLKETSSDNGNASLPDAENTPAEFSSLTLSSVEESLEGTS 1600
WD40-rpts
Query 1601 CTRRRDSGLGEETASGLGSGLSVASPAAPLGVSAGPDAISEVLCTLSLEVNKSQETRIDGGNELDRKVTPSVPVSKNVNV 1680
WD40-rpts
Query 1681 KDILRSLVNMPADGVTVDPALLPPACLGALGDLSVDPPMQFRSFDRSVIIATKKSSVLPSALTTSAPSSAVSVVSSVDPT 1760
WD40-rpts
Query 1761 HASDTGGESPGSRSPNAKLPSVAAVGSVPQDPAAHMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEG 1840
WD40-rpts
Query 1841 TSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFE 1920
WD40-rpts
Query 1921 SLCAQYSADKREEEKMCDHLIRAAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRFVRN 2000
WD40-rpts
Query 2001 PLGSTHPEATLKTAVEHAADEDILAKGKQSIKSQALGNQNSENEALLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAP 2080
WD40-rpts
Query 2081 SVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPD 2160
WD40-rpts
Query 2161 PATVKKVVNYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWV 2240
WD40-rpts
Query 2241 ITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQ 2320
WD40-rpts
Query 2321 GGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRL 2400
WD40-rpts
Query 2401 ALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2480
WD40-rpts
Query 2481 GSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPV 2560
WD40-rpts
Query 2561 EIDPLIACGTGTHRRQVTDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSES 2640
WD40-rpts (___________________WD
Query 2641 YIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGGETATPRAILTGHDYEITCAAVCAELGLVLSGSQEGPCLIHSMNGD 2720
WD40-rpts 1__________________) (_________________WD 2________________)
Query 2721 LLRTLEGPENCLKPKLIQASREGHCVIFYENGCFCTFSVNGKLQATVETDDHIRAIQLSRDGQYLLTGGDNGVVIVRQVS 2800
WD40-rpts (_________________WD 3________________)
Query 2801 DLKQLFAYPGCDAGIRAMALSFDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY 2854
WD40-rpts (_________________WD 4________________)
 4 WD40-repeats found in QUERY=ENSMUSP00000103261 (Len=2854): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 44 2619-2661 5.63 347.35 0.00130 30.0% 54.18 WD 2: Seg 48 2678-2716 3.62 264.38 0.01691 20.0% 54.21 WD 3: Seg 56 2760-2798 4.44 297.93 0.00600 22.5% 54.50 WD 4: Seg 59 2802-2840 3.43 256.49 0.02155 22.5% 48.94Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2619-2661 -GKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWY WD 2 2678-2716 -ATPRAILTGHDYEITCAAVCAE----LGLVLSGSQEGPCLIHS WD 3 2760-2798 NGKLQATVE-TDDHIRAIQLSRD----GQYLLTGGDNGVVIVRQ WD 4 2802-2840 -LKQLFAYPGCDAGIRAMALSFD----QRCIISGMASGSIVLFY WD40 Template TGECLRTLSGHTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |