Input parameters:

  Query = ENSMUSP00000103442 (Len=777)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103442, Len=777):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKLPDDIYPIDLHWFPKSLGIKKQTQAESF 80  
WD40-rpts        (_________________WD 1________________)           (__________________WD 2_____

Query       81 VLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSE 160 
WD40-rpts      ____________)  (_________________WD 3________________)  (________________WD 4___

Query      161 KVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPITSVAWAPD 240 
WD40-rpts      _____________)   (_________________WD 5________________)  (________________WD 6_

Query      241 GELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTMQV 320 
WD40-rpts      _______________)  (_________________WD 7________________)(_______________WD 8___

Query      321 RNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSLQCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYE 400 
WD40-rpts      ___________)  (_______________WD 9_______________)                              

Query      401 GRFISSPKFPGMRTDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEIALDQKGLTNDRKIA 480 
WD40-rpts       (___________________WD10__________________)          (________________WD11_____

Query      481 FIDKNRDLYITSVKRFGKEEQIIKLGTMVHTLAWCDTCNILCGIQDTRFTVWYYPNTIYVDRDILPKTLYERDASEYSKN 560 
WD40-rpts      ___________)   (________________WD12________________)     (_________________WD13

Query      561 PHIVSFVGNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVANRDMVTAEIAYAAV 640 
WD40-rpts      ________________)                                                               

Query      641 GEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQAIQININLYNWERALELAVKYKTHVDTVLAYRQ 720 
WD40-rpts                                                                                      

Query      721 KFLDTFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITKERDRSSSGQSSKSVGLKH 777 
WD40-rpts                                                               

13 WD40-repeats found in QUERY=ENSMUSP00000103442 (Len=777):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       6.33  376.20  0.00053       25.0%     44.73
  WD 2:  Seg  5    53-93       5.29  333.37  0.00200       12.5%     46.25
  WD 3:  Seg  8    96-134      9.10  490.48  1.5e-05       27.5%     54.65
  WD 4:  Seg 12   137-174      5.84  356.00  0.00099       20.0%     55.90
  WD 5:  Seg 16   178-216      8.39  461.22  3.8e-05       22.5%     53.56
  WD 6:  Seg 20   219-256      7.47  423.08  0.00012       32.5%     54.34
  WD 7:  Seg 24   259-297      7.66  431.10  9.6e-05       15.0%     58.56
  WD 8:  Seg 28   298-332      4.37  295.03  0.00656        7.5%     40.54
  WD 9:  Seg 31   335-370      4.68  307.95  0.00440       17.5%     44.22
  WD10:  Seg 38   402-444      6.40  378.99  0.00049       12.5%     33.05
  WD11:  Seg 42   455-492      5.01  321.82  0.00286        7.5%     49.03
  WD12:  Seg 45   496-533      5.32  334.40  0.00194       12.5%     53.22
  WD13:  Seg 49   539-577      5.22  330.16  0.00221       12.5%     17.68

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     LKIS---LSKEPKH-QELVSCVGWTT-A----EELYSCSDDHQIVKWN
   WD 2   53-93     LPDD---IYPIDLHWFPKSLGIKKQTQA----ESFVLTSSDGKFHLIS
   WD 3   96-134    -GRV---EKSVEAH-CGAVLAGRWNYEG----TALVTVGEDGQVKIWS
   WD 4  137-174    -GML---RSTLAQQ-GTPVYSVAWGPDS----EKVLYTAGK-QLIIKP
   WD 5  178-216    -NAK---VLQWKAH-DGIILKVDWNSVN----DLILSAGEDCKYKVWD
   WD 6  219-256    -GRV---LYGSQPH-EHPITSVAWAPDG----ELFAVGSFH-TLRLCD
   WD 7  259-297    -GWS---YALEKPN-TGSIFNIAWSIDG----TQIAGACGNGHVVFAH
   WD 8  298-332    VVE--------QRW-EWKNFQVTLTKRR----TMQVRNVLNDAVDLLE
   WD 9  335-370    -DRV---IKASLNH-AHLVVSTSLQCY-------VFSTKNWNTPLIFD
   WD10  402-444    RFISSPKFPGMRTD-ILNAQTVSLSNDT----IAIKDKADEKIIFLFE
   WD11  455-492    ---------KLLSH-KNEISEIALDQKGLTNDRKIAFIDKNRDLYITS
   WD12  496-533    -FGK---EEQIIKL-GTMVHTLAWCDTC----N-ILCGIQDTRFTVWY
   WD13  539-577    YVD----RDILPKT-LYERDASEYSKNP----HIVSFVGNQVTIRRAD

   WD40 Template    TGEC---LRTLSGH-TSGVTSVSFSPDG----KRLVSGSEDGTIKVWD