Input parameters:

  Query = ENSMUSP00000103576 (Len=739)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000103576, Len=739):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQ 80  
WD40-rpts                                                                                      

Query       81 RWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEE 160 
WD40-rpts                                                                                      

Query      161 DQSPPFHYNTHYSTATSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVKELIPEFYYLPEMFVN 240 
WD40-rpts                                                                                      

Query      241 SNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSV 320 
WD40-rpts                                                                                      

Query      321 NLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTL 400 
WD40-rpts                                                                                      

Query      401 PHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTA 480 
WD40-rpts                                                                                      

Query      481 DNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSS 560 
WD40-rpts                            (___________________WD 1__________________)        (______

Query      561 DYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFS 640 
WD40-rpts      _______________WD 2_____________________)                                       

Query      641 NFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGS 720 
WD40-rpts          (_________________WD 3________________)   (_________________WD 4____________

Query      721 IVAFNIDFNRWHYEHQNRY 739 
WD40-rpts      ____)              

4 WD40-repeats found in QUERY=ENSMUSP00000103576 (Len=739):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   503-545      5.26  331.98  0.00209       32.5%     54.70
  WD 2:  Seg 20   554-601      4.74  310.32  0.00409       25.0%     53.81
  WD 3:  Seg 28   645-683      5.40  337.61  0.00175       30.0%     57.49
  WD 4:  Seg 32   687-725      5.12  326.30  0.00249       22.5%     58.44

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  503-545    -GK--------LTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWY
   WD 2  554-601    GDNPNSSDYPAPRAVLTGHDHEVVCVSVCAE----LGLVISGAKEGPCLVHT
   WD 3  645-683    NGK--------LLAQMEINDS-TRAILLSSD----GQNLVTGGDNGVVEVWQ
   WD 4  687-725    -FK--------QLYIYPGCDAGIRAMDLSHD----QRTLITGMASGSIVAFN

   WD40 Template    TGE--------CLRTLSGHTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD