WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000103585 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000103585 (Len=2904) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000103585, Len=2904): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASDKPGPGLEPQPVALLAVGAGGGAGGGGAMGEPRGAAGSGPVVLPAGMINPSVPIRNIRMKFAVLIGLIQVGEVSNRD 80
WD40-rpts
Query 81 IVETVLNLLVGGEFDLEMNFIIQDAESITCMTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAV 160
WD40-rpts
Query 161 DDMIADLLVDMLGVLASYSITVKELKLLFSMLRGESGIWPRHAVKLLSVLNQMPQRHGPDTFFNFPGCSAAAIALPPIAK 240
WD40-rpts
Query 241 WPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGVGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISI 320
WD40-rpts
Query 321 VHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFAVHQLGP 400
WD40-rpts
Query 401 GYKSTFKFKSESDIHLAEHHKQVLYDGKLASSIAFSYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIH 480
WD40-rpts
Query 481 SAIHSIGGIQVLFPLFAQLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHITRAV 560
WD40-rpts
Query 561 LEQFLSFAKYLDGLSHGAPLLKQLCDHILFNPAIWIHTPAKVQLSLYTYLSAEFIGTATIYTTIRRVGTVLQLMHTLKYY 640
WD40-rpts
Query 641 YWVINPADSSGIAPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLLVALM 720
WD40-rpts
Query 721 SEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMHTHSLFTLLGERLMLHTNTVTVTTY 800
WD40-rpts
Query 801 NTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILKVVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCS 880
WD40-rpts
Query 881 VWQDWMFSLGYINPKSSEEQKITEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEEYQRQEE 960
WD40-rpts
Query 961 ENIKKGKKGNVSTISGLSSQTAGAKGGMEIREIEDLSQSQSPESETDYPVSTDTRDLLMSTKVSDDILGSSDRPGSGVHV 1040
WD40-rpts
Query 1041 EVHDLLVDIKAEKVEATEVKLDDMDLSPETLVGGENGALVEVESLLDNVYSAAVEKLQNNVHGSVGIIKKNEEKDNGPLI 1120
WD40-rpts
Query 1121 TLADEKEELPNSSTPFLFDKIPRQEEKLLPELSSNHIIPNIQDTQVHLGVSDDLGLLAHMTASVELTCTSSIMEEKDFRI 1200
WD40-rpts
Query 1201 HTTSDGVSSVSERELASSTKGLDYAEMTATTLETESSNSKAVPNVDAGSIISDTERSDDGKESGKEIRKIQTTATTQAVQ 1280
WD40-rpts
Query 1281 GRSSTQQDRDLRVDLGFRGMPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALETDVHVWRSHSTKSVMDFV 1360
WD40-rpts
Query 1361 NSNENIIFVHNTIHLISQMVDNIIIACGGILPLLSAATSPTGSKTELENIEVTQGMSAETAVTFLSRLMAMVDVLVFASS 1440
WD40-rpts
Query 1441 LNFSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLECRQRQRDRGSKSSHGSSKPQEAPHSVTAASASKTPLENVPGNLSP 1520
WD40-rpts
Query 1521 IKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETARTGSQPGRNIRQEINSPTST 1600
WD40-rpts
Query 1601 ETPATFPDTVKEKETPTPGEDIQLESSVPHTDSGMGEEQVASILDGAELEPAAGPDAMSELLSTLSSEVKKSQESLTEHP 1680
WD40-rpts
Query 1681 SEMLKPAPSISSISQTKGINVKEILKSLVAAPVEIAECGPEPIPYPDPALKREAHAILPMQFHSFDRSVVVPVKKPPPGS 1760
WD40-rpts
Query 1761 LAVTTVGATAAGSGLPTGSTSSIFAAPGATPKSMINTTGAVDSGSSSSSSSSSFVNGATSKNLPAVQTVAPMPEDSAENM 1840
WD40-rpts
Query 1841 SITAKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIE 1920
WD40-rpts
Query 1921 LINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQK 2000
WD40-rpts
Query 2001 ILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEALLKSAVEYGTEEDVVKSKKAFRSQAIVNQ 2080
WD40-rpts
Query 2081 NSETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDAAFKKIDTKVLAYTEG 2160
WD40-rpts
Query 2161 LHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKS 2240
WD40-rpts
Query 2241 SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERY 2320
WD40-rpts
Query 2321 ETWEEDQSPPFHYNTHYSTATSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVKELIPEFYYLP 2400
WD40-rpts
Query 2401 EMFVNSNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLT 2480
WD40-rpts
Query 2481 YEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHV 2560
WD40-rpts
Query 2561 AANTLPHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINAHC 2640
WD40-rpts (_______________
Query 2641 FVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGD 2720
WD40-rpts __WD 1_________________) (___________________WD 2__________________) (_
Query 2721 NPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYE 2800
WD40-rpts ____________________WD 3_____________________)
Query 2801 RGRFSNFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITG 2880
WD40-rpts (_________________WD 4________________) (_________________WD 5_______
Query 2881 MASGSIVAFNIDFNRWHYEHQNRY 2904
WD40-rpts _________)
 5 WD40-repeats found in QUERY=ENSMUSP00000103585 (Len=2904): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 35 2625-2664 3.12 243.54 0.03204 17.5% 36.92 WD 2: Seg 38 2668-2710 5.38 336.69 0.00180 32.5% 54.83 WD 3: Seg 43 2719-2766 4.31 292.83 0.00703 25.0% 53.06 WD 4: Seg 51 2810-2848 5.19 328.97 0.00229 27.5% 57.49 WD 5: Seg 55 2852-2890 4.26 290.47 0.00756 22.5% 56.21Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2625-2664 QIT--------DLVDQSIQINAHCFVVTAD----NRYILICGFWDKSFRVYS WD 2 2668-2710 -GK--------LTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWY WD 3 2719-2766 GDNPNSSDYPAPRAVLTGHDHEVVCVSVCA----ELGLVISGAKEGPCLVHT WD 4 2810-2848 NGK--------LLAQME-INDSTRAILLSS----DGQNLVTGGDNGVVEVWQ WD 5 2852-2890 -FK--------QLYIYPGCDAGIRAMDLSH----DQRTLITGMASGSIVAFN WD40 Template TGE--------CLRTLSGHTSGVTSVSFSP----DGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |