Input parameters:

  Query = ENSMUSP00000104912 (Len=1616)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104912, Len=1616):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGAADESSVRVAVRIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYTQCIEKLIEGCFEGY 80  
WD40-rpts                                                                                      

Query       81 NATVFAYGQTGAGKTYTMGTGFDVNIMEEEQGIISRAVRHLFKSIDEKKTSAIKNGLPPPEFKVNAQFLELYNEEVLDLF 160 
WD40-rpts                                                                                      

Query      161 DTTRDIDAKNKKSNIRIHEDSTGGIYTVGVTTRTVNTEPEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVC 240 
WD40-rpts                                                                                      

Query      241 PQTDAENATDNKLISESSPMNEFETLTAKFHFVDLAGSERLKRTGATGERAKEGISINCGLLALGNVISALGDKSKRATH 320 
WD40-rpts                                                                                      

Query      321 VPYRDSKLTRLLQDSLGGNSQTIMIACVSPSDRDFMETLNTLKYANRARNIKNKVMVNQDRASQQINALRSEITRLQMEL 400 
WD40-rpts                                                                                      

Query      401 MEYKTGKRIIDEEGVESINDMFHENAMLQTENNNLRVRIKAMQETVDALRARITQLVSEQANQVLARAGEGNEEISNMIH 480 
WD40-rpts                                                                                      

Query      481 SYIKEIEDLRAKLLESEAVNENLRKNLTRATARSPYFSASSAFSPTILSSDKETIEIIDLAKKDLEKLKRKEKKKKKRLQ 560 
WD40-rpts                                                                                      

Query      561 KLEESGREERSVAGKDDNADTDQEKKEEKGVSEKENNELDVEENQEVSDHEDEEEEEEDEEEEDDIEGEESSDESDSESD 640 
WD40-rpts                                                                                      

Query      641 EKANYQADLANITCEIAIKQKLIDELENSQKRLQTLKKQYEEKLMMLQHKIRDTQLERDQVLQNLGSVESYSEEKAKKVK 720 
WD40-rpts                                                                                      

Query      721 CEYEKKLHAMNKELQRLQTAQKEHARLLKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKEEQEKARLTESRRNREIAQL 800 
WD40-rpts                                                                                      

Query      801 KKDQRKRDHQLRLLEAQKRNQEVVLRRKTEEVTALRRQVRPMSDKVAGKVTRKLSSSESPAPDTGSSAASGEADTSRPGT 880 
WD40-rpts                                                                                      

Query      881 QQKMRIPVARVQALPTPTTNGTRKKYQRKGFTGRVFTSKTARMKWQLLERRVTDIIMQKMTISNMEADMNRLLRQREELT 960 
WD40-rpts                                                                                      

Query      961 KRREKLSKRREKIVKESGEGDKSVANIIEEMESLTANIDYINDSIADCQANIMQMEEAKEEGETLDVTAVINACTLTEAR 1040
WD40-rpts                                                                                      

Query     1041 YLLDHFLSMGINKGLQAAQKEAQIKVLEGRLKQTEITSATQNQLLFHMLKEKAELNPELDALLGHALQDLDGAPPENEED 1120
WD40-rpts                                                                                      

Query     1121 SSEEDGPLHSPGSEGSTLSSDLMKLCGEVKPKNKARRRTTTQMELLYADSSEVASDTSAGDASLSGPLAPVAEGQEIGMN 1200
WD40-rpts                                                                                      

Query     1201 TETSGTSARDKELLAPSGLPSKIGSISRQSSLSEKKVPEPSPVTRRKAYEKADKPKAKEHKQGIINPFPACKGVRASPLQ 1280
WD40-rpts                                                                                      

Query     1281 CVHIAEGHTKAVLCVDSTDDLLFTGSKDRTCKVWNLVTGQEIMSLGVHPNNVVSVKYCNYTSLVFTVSTSYIKVWDIRES 1360
WD40-rpts       (______________WD 1______________)      (_______________WD 2______________)    

Query     1361 AKCIRTLTSSGQVTLGEACSASTSRTVAIPSGESQINQIALNPTGTFLYAASGNAVRMWDLKRFQSTGKLTGHLGPVMCL 1440
WD40-rpts                                                                  (___________________

Query     1441 TVDQISNGQDLIITGSKDHYIKMFDVTEGALGTVSPTHNFEPPHYDGIEALAIQGDNLFSGSRDNGIKKWDLAQKGLLQQ 1520
WD40-rpts      _WD 3___________________)                             (_________________________

Query     1521 VPNAHKDWVCALGLVPGHPVLLSGCRGGILKLWNVDTFVPVGEMRGHDSPINAICVNSTHVFTAADDRTVRIWKAHNLQD 1600
WD40-rpts      __WD 4___________________________)                                              

Query     1601 GQLSDTGDLGEDIASN 1616
WD40-rpts                      

4 WD40-repeats found in QUERY=ENSMUSP00000104912 (Len=1616):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13  1282-1315     3.21  247.15  0.02870       35.0%     33.64
  WD 2:  Seg 16  1322-1356     3.08  241.76  0.03383       27.5%     39.98
  WD 3:  Seg 21  1421-1465     3.34  252.76  0.02417       30.0%     38.34
  WD 4:  Seg 25  1495-1554     4.05  282.15  0.00977       22.5%     37.96

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1282-1315   ----V--------------------H--I--AEGHTKAVLCVDS---TDD--LLFTGSKDRTCKVWN
   WD 2 1322-1356   --------------------------IMS--LGVHPNNVVSVKY---CNYTSLVFTVS-TSYIKVWD
   WD 3 1421-1465   LKRFQ--------------------S--TGKLTGHLGPVMCLTVDQISNGQDLIITGSKDHYIKMFD
   WD 4 1495-1554   GDNLFSGSRDNGIKKWDLAQKGLLQQ--V--PNAHKDWVCALGL---VPGHPVLLSGCRGGILKLWN

   WD40 Template    TGECL--------------------R--T--LSGHTSGVTSVSF---SPDGKRLVSGSEDGTIKVWD