Input parameters:

  Query = ENSMUSP00000105483 (Len=800)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105483, Len=800):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVSDRIASLEQRVQMQEDDIQLLKSALADVVRRLNITEEQQAVLNRKGPTKARPLGQTLPLRTTVNNGTVLPKKPSASL 80  
WD40-rpts                                                                                      

Query       81 PAPSGARKEVVVPVTKSINRTSSSERVSPGGRRESSGDSKGSRNRTGSTSSSSSGKKNSESKPKEPAFSPALQSPKPQGK 160 
WD40-rpts                                                                                      

Query      161 RRVTHCKEEGYVKMFLRGRPVTMYMPKDQVDSYSLEAKAELPTKRLKLEWVYGYRGRDCRNNLYLLPTGETVYFIASVVV 240 
WD40-rpts               (_________________WD 1________________)                                

Query      241 LYNVEEQLQRHYAGHNDDVKCLAVHPDRITIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDRAVTCIAFSK 320 
WD40-rpts           (______________________WD 2_____________________)(_____________________WD 3

Query      321 SNGGGHLCAVDDSNDHVLSVWDWQKEERLADVKCSNEAVFAADFHPTDTNIIVTCGKSHLYFWTLEGNSLNKKQGLFEKQ 400 
WD40-rpts      _____________________)   (_________________WD 4________________)        (_______

Query      401 EKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKDRRLISWNGNYQKLH 480 
WD40-rpts      _________WD 5________________)(___________________WD 6__________________)   (___

Query      481 KAEIPEQFGPIRTVAEGKGNVILIGTTRNFVLQGTLSGDFTPITQGHTDELWGLAIHASKPQFLTCGHDKHATLWDAVGH 560 
WD40-rpts      ______________WD 7________________)  (_________________WD 8________________)  (_

Query      561 RPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDTETKDLVTVHTDGNEQLSVMRYSPDGNFLAIGSHDNCIYIYGV 640 
WD40-rpts      ________________WD 9________________)   (_________________WD10________________) 

Query      641 TDNGRKYTRVGKCSGHSSFITHLDWSVNSQFLVSNSGDYEILYWVPSACKQVVSVETTRDIEWATYTCTLGFHVFGVWPE 720 
WD40-rpts            (_________________WD11________________)                       (___________

Query      721 GSDGTDINAVCRAHERKLLCTGDDFGKVHLFSYPCSQFRAPSHIYSGHSSHVTNVDFLCEDSHLISTGGKDTSIMQWRVI 800 
WD40-rpts      ________WD12___________________)     (__________________WD13_________________)  

13 WD40-repeats found in QUERY=ENSMUSP00000105483 (Len=800):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   170-208      4.91  317.59  0.00326       17.5%     19.60
  WD 2:  Seg  9   246-294      6.97  402.63  0.00023       27.5%     52.83
  WD 3:  Seg 13   295-342      5.86  356.89  0.00096       25.0%     46.97
  WD 4:  Seg 17   346-384      7.46  422.99  0.00012       15.0%     58.23
  WD 5:  Seg 21   393-430      5.47  340.49  0.00160       27.5%     46.20
  WD 6:  Seg 24   431-473      7.29  415.66  0.00016       20.0%     54.58
  WD 7:  Seg 28   477-515      4.23  289.28  0.00784        7.5%     51.97
  WD 8:  Seg 32   518-556      8.16  451.74  5.1e-05       17.5%     55.08
  WD 9:  Seg 36   559-597      6.68  390.55  0.00034       22.5%     55.08
  WD10:  Seg 40   601-639      8.40  461.59  3.7e-05       22.5%     58.32
  WD11:  Seg 44   647-685      7.98  444.25  6.4e-05       32.5%     53.75
  WD12:  Seg 50   709-752      6.09  366.40  0.00072       15.0%     43.94
  WD13:  Seg 54   758-798      8.22  454.10  4.7e-05       32.5%     49.59

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-208    -GY---V----KMFLRGRPVTMYMPKD-QVDSY----SLEAKAELPT----------KRLKL
   WD 2  246-294    -EQ---L----QRHYAGHNDDVKCLAV-HPDRI----TIATGQVAGTSKDGKQLPPHVRIWD
   WD 3  295-342    SVT---LNTLHVIGIGFFDRAVTCIAF-SKSNGGGHLCAVDDSNDHV----------LSVWD
   WD 4  346-384    -EE---R----LADVKCSNEAVFAADF-HPTDT----NIIVTCGKSH----------LYFWT
   WD 5  393-430    -KQ---G----LFEKQEKPKFVLCVTF-SENGD----TI-TGDSSGN----------ILVWG
   WD 6  431-473    KGTNRIS----YAVQGAHEGGIFALCM-LRDGT----LVSGGGKDRR----------LISWN
   WD 7  477-515    -QK---L----HKAEIPEQFGPIRTVA-EGKGN----VILIGTTRNF----------VLQGT
   WD 8  518-556    -GD---F----TPITQGHTDELWGLAI-HASKP----QFLTCGHDKH----------ATLWD
   WD 9  559-597    -GH---R----PVWDKIIEDPAQSSGF-HPSGS----VVAVGTLTGR----------WFVFD
   WD10  601-639    -KD---L----VTVHTDGNEQLSVMRY-SPDGN----FLAIGSHDNC----------IYIYG
   WD11  647-685    -YT---R----VGKCSGHSSFITHLDW-SVNSQ----FLVSNSGDYE----------ILYWV
   WD12  709-752    TLG---FHVFGVWPEGSDGTDINAVCR-AHERK----LLCTGDDFGK----------VHLFS
   WD13  758-798    FRA---P----SHIYSGHSSHVTNVDFLCEDSH----LISTGGKDTS----------IMQWR

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSF-SPDGK----RLVSGSEDGT----------IKVWD