Input parameters:

  Query = ENSMUSP00000105486 (Len=814)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105486, Len=814):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDGFSSYSSLYDTSSLLQFCNDDSASAASSMEVSDRIASLEQRVQMQEDDIQLLKSALADVVRRLNITEEQQAVLNRKG 80  
WD40-rpts                                                                                      

Query       81 PTKARPLGQTLPLRTTVNNGTVLPKKPSASLPAPSGARKEVVVPVTKSINRTSSSERVSPGGRRESSGDSKGSRNRTGST 160 
WD40-rpts                                                                                      

Query      161 SSSSSGKKNSESKPKEPAFSPEEGYVKMFLRGRPVTMYMPKDQVDSYSLEAKAELPTKRLKLEWVYGYRGRDCRNNLYLL 240 
WD40-rpts                                                                                      

Query      241 PTGETVYFIASVVVLYNVEEQLQRHYAGHNDDVKCLAVHPDRITIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGI 320 
WD40-rpts                         (______________________WD 1_____________________)(___________

Query      321 GFFDRAVTCIAFSKSNGGGHLCAVDDSNDHVLSVWDWQKEERLADVKCSNEAVFAADFHPTDTNIIVTCGKSHLYFWTLE 400 
WD40-rpts      __________WD 2_____________________)   (_________________WD 3________________)  

Query      401 GNSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKD 480 
WD40-rpts            (________________WD 4________________)(___________________WD 5____________

Query      481 RRLISWNGNYQKLHKAEIPEQFGPIRTVAEGKGNVILIGTTRNFVLQGTLSGDFTPITQGHTDELWGLAIHASKPQFLTC 560 
WD40-rpts      ______)   (_________________WD 6________________)  (_________________WD 7_______

Query      561 GHDKHATLWDAVGHRPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDTETKDLVTVHTDGNEQLSVMRYSPDGNFL 640 
WD40-rpts      _________)  (_________________WD 8________________)   (_________________WD 9____

Query      641 AIGSHDNCIYIYGVTDNGRKYTRVGKCSGHSSFITHLDWSVNSQFLVSNSGDYEILYWVPSACKQVVSVETTRDIEWATY 720 
WD40-rpts      ____________)       (_________________WD10________________)                     

Query      721 TCTLGFHVFGVWPEGSDGTDINAVCRAHERKLLCTGDDFGKVHLFSYPCSQFRAPSHIYSGHSSHVTNVDFLCEDSHLIS 800 
WD40-rpts        (___________________WD11___________________)     (__________________WD12______

Query      801 TGGKDTSIMQWRVI 814 
WD40-rpts      ___________)  

12 WD40-repeats found in QUERY=ENSMUSP00000105486 (Len=814):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   260-308      7.05  405.93  0.00021       27.5%     51.12
  WD 2:  Seg 11   309-356      5.94  359.97  0.00088       25.0%     42.99
  WD 3:  Seg 15   360-398      7.49  424.11  0.00012       15.0%     57.80
  WD 4:  Seg 18   407-444      5.38  336.83  0.00180       27.5%     47.59
  WD 5:  Seg 22   445-487      7.38  419.63  0.00014       20.0%     54.88
  WD 6:  Seg 26   491-529      4.54  302.08  0.00528        7.5%     51.85
  WD 7:  Seg 30   532-570      8.20  453.22  4.8e-05       17.5%     55.56
  WD 8:  Seg 34   573-611      6.71  391.67  0.00033       22.5%     55.14
  WD 9:  Seg 38   615-653      8.42  462.45  3.6e-05       22.5%     58.36
  WD10:  Seg 42   661-699      8.02  445.82  6.1e-05       32.5%     53.68
  WD11:  Seg 48   723-766      6.06  364.97  0.00075       15.0%     43.73
  WD12:  Seg 52   772-812      8.33  458.55  4.1e-05       32.5%     49.66

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  260-308    -EQ---L----QRHYAGHNDDVKCLAV-HPDRIT----IATGQVAGTSKDGKQLPPHVRIWD
   WD 2  309-356    SVT---LNTLHVIGIGFFDRAVTCIAF-SKSNGGGHLCAVDDSNDHV----------LSVWD
   WD 3  360-398    -EE---R----LADVKCSNEAVFAADF-HPTDTN----IIVTCGKSH----------LYFWT
   WD 4  407-444    -KQ---G----LFEKQEKPKFVLCVTF-SENGDT----I-TGDSSGN----------ILVWG
   WD 5  445-487    KGTNRIS----YAVQGAHEGGIFALCM-LRDGTL----VSGGGKDRR----------LISWN
   WD 6  491-529    -QK---L----HKAEIPEQFGPIRTVA-EGKGNV----ILIGTTRNF----------VLQGT
   WD 7  532-570    -GD---F----TPITQGHTDELWGLAI-HASKPQ----FLTCGHDKH----------ATLWD
   WD 8  573-611    -GH---R----PVWDKIIEDPAQSSGF-HPSGSV----VAVGTLTGR----------WFVFD
   WD 9  615-653    -KD---L----VTVHTDGNEQLSVMRY-SPDGNF----LAIGSHDNC----------IYIYG
   WD10  661-699    -YT---R----VGKCSGHSSFITHLDW-SVNSQF----LVSNSGDYE----------ILYWV
   WD11  723-766    TLG---FHVFGVWPEGSDGTDINAVCR-AHERKL----LCTGDDFGK----------VHLFS
   WD12  772-812    FRA---P----SHIYSGHSSHVTNVDFLCEDSHL----ISTGGKDTS----------IMQWR

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSF-SPDGKR----LVSGSEDGT----------IKVWD