Input parameters:

  Query = ENSMUSP00000105488 (Len=831)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105488, Len=831):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDGFSSYSSLYDTSSLLQFCNDDSASAASSMEVSDRIASLEQRVQMQEDDIQLLKSALADVVRRLNITEEQQAVLNRKG 80  
WD40-rpts                                                                                      

Query       81 PTKARPLGQTLPLRTTVNNGTVLPKKPSASLPAPSGARKEVVVPVTKSINRTSSSERVSPGGRRESSGDSKGSRNRTGST 160 
WD40-rpts                                                                                      

Query      161 SSSSSGKKNSESKPKEPAFSPALQSPKPQGKRRVTHCKEEGYVKMFLRGRPVTMYMPKDQVDSYSLEAKAELPTKRLKLE 240 
WD40-rpts                                              (_________________WD 1________________) 

Query      241 WVYGYRGRDCRNNLYLLPTGETVYFIASVVVLYNVEEQLQRHYAGHNDDVKCLAVHPDRITIATGQVAGTSKDGKQLPPH 320 
WD40-rpts                                          (______________________WD 2_________________

Query      321 VRIWDSVTLNTLHVIGIGFFDRAVTCIAFSKSNGGGHLCAVDDSNDHVLSVWDWQKEERLADVKCSNEAVFAADFHPTDT 400 
WD40-rpts      ____)(_____________________WD 3_____________________)   (_________________WD 4__

Query      401 NIIVTCGKSHLYFWTLEGNSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIF 480 
WD40-rpts      ______________)            (______________WD 5______________)(__________________

Query      481 ALCMLRDGTLVSGGGKDRRLISWNGNYQKLHKAEIPEQFGPIRTVAEGKGNVILIGTTRNFVLQGTLSGDFTPITQGHTD 560 
WD40-rpts      _WD 6__________________)   (_________________WD 7________________)  (___________

Query      561 ELWGLAIHASKPQFLTCGHDKHATLWDAVGHRPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDTETKDLVTVHTD 640 
WD40-rpts      ______WD 8________________)  (_________________WD 9________________)   (________

Query      641 GNEQLSVMRYSPDGNFLAIGSHDNCIYIYGVTDNGRKYTRVGKCSGHSSFITHLDWSVNSQFLVSNSGDYEILYWVPSAC 720 
WD40-rpts      _________WD10________________)       (_________________WD11________________)    

Query      721 KQVVSVETTRDIEWATYTCTLGFHVFGVWPEGSDGTDINAVCRAHERKLLCTGDDFGKVHLFSYPCSQFRAPSHIYSGHS 800 
WD40-rpts                         (___________________WD12___________________)     (___________

Query      801 SHVTNVDFLCEDSHLISTGGKDTSIMQWRVI 831 
WD40-rpts      _______WD13_________________)  

13 WD40-repeats found in QUERY=ENSMUSP00000105488 (Len=831):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   201-239      5.14  326.86  0.00245       17.5%     20.06
  WD 2:  Seg 10   277-325      7.03  405.02  0.00022       27.5%     52.43
  WD 3:  Seg 14   326-373      5.92  359.30  0.00089       25.0%     43.24
  WD 4:  Seg 18   377-415      7.44  422.17  0.00013       15.0%     58.25
  WD 5:  Seg 22   428-461      5.42  338.55  0.00170       25.0%     48.18
  WD 6:  Seg 25   462-504      7.33  417.40  0.00015       20.0%     55.31
  WD 7:  Seg 29   508-546      3.99  279.60  0.01057        7.5%     51.39
  WD 8:  Seg 33   549-587      8.16  451.79  5.1e-05       17.5%     55.05
  WD 9:  Seg 37   590-628      6.69  391.00  0.00033       22.5%     55.49
  WD10:  Seg 41   632-670      8.42  462.56  3.6e-05       22.5%     58.00
  WD11:  Seg 45   678-716      7.99  444.52  6.4e-05       32.5%     53.54
  WD12:  Seg 51   740-783      6.02  363.14  0.00079       15.0%     42.77
  WD13:  Seg 55   789-829      8.23  454.78  4.6e-05       32.5%     50.18

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  201-239    -GY---V----KMFLRGRPVTMYMPKD-QVDSYS----LEAKAELPT----------KRLKL
   WD 2  277-325    -EQ---L----QRHYAGHNDDVKCLAV-HPDRIT----IATGQVAGTSKDGKQLPPHVRIWD
   WD 3  326-373    SVT---LNTLHVIGIGFFDRAVTCIAF-SKSNGGGHLCAVDDSNDHV----------LSVWD
   WD 4  377-415    -EE---R----LADVKCSNEAVFAADF-HPTDTN----IIVTCGKSH----------LYFWT
   WD 5  428-461    ------------FEKQEKPKFVLCVTF-SENGDT----I-TGDSSGN----------ILVWG
   WD 6  462-504    KGTNRIS----YAVQGAHEGGIFALCM-LRDGTL----VSGGGKDRR----------LISWN
   WD 7  508-546    -QK---L----HKAEIPEQFGPIRTVA-EGKGNV----ILIGTTRNF----------VLQGT
   WD 8  549-587    -GD---F----TPITQGHTDELWGLAI-HASKPQ----FLTCGHDKH----------ATLWD
   WD 9  590-628    -GH---R----PVWDKIIEDPAQSSGF-HPSGSV----VAVGTLTGR----------WFVFD
   WD10  632-670    -KD---L----VTVHTDGNEQLSVMRY-SPDGNF----LAIGSHDNC----------IYIYG
   WD11  678-716    -YT---R----VGKCSGHSSFITHLDW-SVNSQF----LVSNSGDYE----------ILYWV
   WD12  740-783    TLG---FHVFGVWPEGSDGTDINAVCR-AHERKL----LCTGDDFGK----------VHLFS
   WD13  789-829    FRA---P----SHIYSGHSSHVTNVDFLCEDSHL----ISTGGKDTS----------IMQWR

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSF-SPDGKR----LVSGSEDGT----------IKVWD