Input parameters:

  Query = ENSMUSP00000105585 (Len=1228)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105585, Len=1228):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVDRLVDGCLDTNAQSLLSGLKGRILDAQPGALKSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNHQVLEQLRELEL 80  
WD40-rpts                                                                                      

Query       81 ARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLRQQLRQDESRTHTPLVLFGPPGIGKTSLMCKLAQQVPELLGHKT 160 
WD40-rpts                                                                                      

Query      161 VVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGLPLPPAQVLEAHSRVGHFFHTLLHTVSQRNFESLVLLLDSVDDLDSIC 240 
WD40-rpts                                                                                      

Query      241 HSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQQTLKDPSTYWEVKALSGSQGQEFIQLLLAAEKRMLSPGQRDVLWASL 320 
WD40-rpts                                                                                      

Query      321 PECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEAELKDVLSLDDE 400 
WD40-rpts                                                                                      

Query      401 VLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSG 480 
WD40-rpts                                                                                      

Query      481 AWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSSTVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEV 560 
WD40-rpts                                                                                      

Query      561 LLDDFDMCAPHMNSPEVDLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQSWFRACPYPMLV 640 
WD40-rpts                                                                                      

Query      641 PLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVEEQQVVHVLMGHTAEVKCVRVFAQGTLAIS 720 
WD40-rpts                (_________________WD 1________________)   (_________________WD 2______

Query      721 ASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQSWDLHVDERNNVVYSTSGARINMWNLETSKLVFCITGDVSDPWVCVA 800 
WD40-rpts      __________)    (___________________WD 3__________________)   (_________________W

Query      801 LLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQLSSIKEETPTCAVSIQSRARLVAGFSSGSIALVSAGEDRLLEKLPEAV 880 
WD40-rpts      D 4_________________)(____________________WD 5___________________)     (________

Query      881 GFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRFMASDLEHEDMVETAVLGPENNLIITGSRDALIQVWSLSEQGTLLNVL 960 
WD40-rpts      ______WD 6_____________)      (_________________WD 7________________)    (______

Query      961 EGVGAPVSLLVRGGTLVVSASRKSSSFKVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKVGDKNKVTIWDLAEGE 1040
WD40-rpts      __________WD 8________________)   (__________________WD 9_________________)(____

Query     1041 EQDCLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSENRLAIAYDNIVLVLDI 1120
WD40-rpts      ______________WD10_________________)   (_________________WD11_________________) 

Query     1121 SPGDPCPAIEGPTYTFYTQLPETIVSVAVLADYRVVYGMSDGSLFLYDCACSKVFPLEAHGSRVSCVEVSHSEQLAVSGA 1200
WD40-rpts               (_________________WD12________________)  (_________________WD13________

Query     1201 EDALLCLWDLQACRGMFEMSYEVGGLDN 1228
WD40-rpts      ________)                   

13 WD40-repeats found in QUERY=ENSMUSP00000105585 (Len=1228):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   651-689      8.97  485.22  1.8e-05       40.0%     54.41
  WD 2:  Seg 13   693-731      8.99  486.22  1.7e-05       30.0%     55.17
  WD 3:  Seg 17   736-778      5.23  330.56  0.00218       17.5%     39.75
  WD 4:  Seg 21   782-821      6.79  395.34  0.00029       17.5%     58.23
  WD 5:  Seg 25   822-866      6.00  362.65  0.00081       22.5%     48.08
  WD 6:  Seg 29   872-904      4.21  288.58  0.00801       15.0%     45.01
  WD 7:  Seg 32   911-949      7.97  443.83  6.5e-05       22.5%     51.12
  WD 8:  Seg 36   954-991      5.70  350.32  0.00118       25.0%     51.72
  WD 9:  Seg 40   995-1035     6.24  372.35  0.00060       12.5%     48.45
  WD10:  Seg 44  1036-1076     6.83  396.72  0.00028       17.5%     53.79
  WD11:  Seg 48  1080-1119     4.61  305.25  0.00478       20.0%     52.07
  WD12:  Seg 53  1130-1168     6.95  401.67  0.00024       25.0%     45.40
  WD13:  Seg 56  1171-1209     8.47  464.48  3.4e-05       32.5%     54.05

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  651-689    -G----P-LRATL--TGC--HKG-ITAIA----WSLEEK-LL--VVGTQDGAMVVWD
   WD 2  693-731    -Q----Q-VVHVL--MGH--TAE-VKCVR----VFAQGT-LA--ISASKDHTLRLWS
   WD 3  736-778    -Q----E-KVTIL--DGG--SQN-PTEPQSWDLHVDERN-NV--VYSTSGARINMWN
   WD 4  782-821    -S----K-LVFCI--TGD--VSDPWVCVA----LLAAQG-LL--LALSKGGQVSLWS
   WD 5  822-866    SAMGKLQ-EKHQL--SSI--KEE-TPTCA----VSIQSRARL--VAGFSSGSIALVS
   WD 6  872-904    -------------LLEKL--PEA-VGFLV----VSEDDS-LL--VAGF-GRFVRIFL
   WD 7  911-949    -H----R-FMASD--LEH--EDM-VETAV----LGPENN-LI--ITGSRDALIQVWS
   WD 8  954-991    -G----T-LLNVL--EGV--GAP-V-SLL----VRGGTL-VV--SASRKSSSFKVWD
   WD 9  995-1035   -T----K-KLQSP--TPF--LDR-TGLAA----VSHHGS-FVYFPKVGDKNKVTIWD
   WD10 1036-1076   LA----EGEEQDC--LDT--SNE-VRCLE----VAEQAK-LL--FTGLVSGIVLVFP
   WD11 1080-1119   -R----Q-DVLCI--PPPEARKA-VNCMS----LSKSEN-RL--AIAY-DNIVLVLD
   WD12 1130-1168   EG----P-TYTFY--TQL--PET-IVSVA----VLADY--RV--VYGMSDGSLFLYD
   WD13 1171-1209   -C----S-KVFPL--EAH--GSR-VSCVE----VSHSEQ-LA--VSGAEDALLCLWD

   WD40 Template    TG----E-CLRTL--SGH--TSG-VTSVS----FSPDGK-RL--VSGSEDGTIKVWD