Input parameters:

  Query = ENSMUSP00000106128 (Len=642)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106128, Len=642):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLSVSRILRRKNLLVTGGLDRIIRVWNPYLPGKPTGVLRGHRAPVMYVHVAFEENKVFSMSADNTVKVWDLETHGCCCT 80  
WD40-rpts      (___________WD 1___________)    (_________________WD 2________________)   (_____

Query       81 ISSKASGIKGELTACLYLPGPRALCVATGTLAFLHLKVGSVPESHLVRSHQEPVVCCRYNPAFRHVVSCCEASVVKVWDF 160 
WD40-rpts      ______________WD 3__________________)   (_________________WD 4________________) 

Query      161 ETGRQVSEFIGTHGNAGITCLTFDSSGRRLVTGGRDGCLKIWSYNNGHCLHTLQHDENQSEVCDCTYMEVNRNRCVIAVG 240 
WD40-rpts        (__________________WD 5_________________)   (___________________WD 6__________

Query      241 WDRRINVYFDIPRDFHHFRKPQPHWQDDLNHGHKEDILCVAQCPPFLLATSSYDGEIIVWNVISGHMYCKLNTPSPMDGQ 320 
WD40-rpts      ________)              (________________WD 7________________)          (________

Query      321 DHREGPDRSVSQLAFLKTRLTKLDSASAALISNGPGGSVCFWKLFSGSGLVANFTPSREKAQVSGIVVTSGDTLAYLADQ 400 
WD40-rpts      _______________WD 8_______________________)(____________________WD 9____________

Query      401 HGFIHVYDIQEYGLQGTELQAPNTVTSWRAHVSMVTSLELIEGGSIVLSSSLDCTVRLWSQDGAYIGTFGQNHPWDVFTP 480 
WD40-rpts      _______)             (_________________WD10________________)(________________WD1

Query      481 DSWGHPRVPFEILTDPRSMPTHRVLETDVPAGCLEGRQEQDHGTEEKDPCEAEKTPNPPSPEGLTVEAEAKADKSRWAAF 560 
WD40-rpts      1________________)(_________________WD12________________)                       

Query      561 CHGRLLSARRKPRWKMPELRWPSIYQALRCHELAFVSALGEKPDLSVPGSDLFPVGFCSQETEAALPERKKLSPWSGFLP 640 
WD40-rpts                                                                                      

Query      641 EC 642 
WD40-rpts        

12 WD40-repeats found in QUERY=ENSMUSP00000106128 (Len=642):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-28       4.50  300.52  0.00554       17.5%     41.73
  WD 2:  Seg  4    33-71       9.24  496.31  1.3e-05       35.0%     55.76
  WD 3:  Seg  8    75-117      6.22  371.47  0.00061       20.0%     55.14
  WD 4:  Seg 12   121-159      8.77  476.83  2.3e-05       25.0%     54.35
  WD 5:  Seg 16   163-203      8.60  469.88  2.9e-05       35.0%     56.07
  WD 6:  Seg 20   207-249      6.62  388.09  0.00037       20.0%     56.49
  WD 7:  Seg 24   264-301      6.09  366.22  0.00072       27.5%     46.76
  WD 8:  Seg 28   312-363      4.73  310.08  0.00412       15.0%     27.16
  WD 9:  Seg 32   364-408      7.30  416.25  0.00015       17.5%     51.18
  WD10:  Seg 36   422-460      8.36  459.92  3.9e-05       27.5%     53.80
  WD11:  Seg 40   461-498      3.78  270.98  0.01380        7.5%     17.25
  WD12:  Seg 43   499-537      4.50  300.60  0.00552        7.5%      1.41

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-28     -------------------ML------------LSVSRIL----RRKNLLVTGGLDRIIRVWN
   WD 2   33-71     -GK-----PTGVLRGH--RAP------------VMYVHVA----FEENKVFSMSADNTVKVWD
   WD 3   75-117    -HG-----CCCTISSK--ASG--------IKGELTACLYL----PGPRALCVATGTLAFLHLK
   WD 4  121-159    -VP-----ESHLVRSH--QEP------------VVCCRYN----PAFRHVVSCCEASVVKVWD
   WD 5  163-203    -GR-----QVSEFIGTHGNAG------------ITCLTFD----SSGRRLVTGGRDGCLKIWS
   WD 6  207-249    -GH-----CLHTLQHD--ENQ------------SEVCDCTYMEVNRNRCVIAVGWDRRINVYF
   WD 7  264-301    -HW-----QDDLNHGH--KED------------ILCVAQC----PPF-LLATSSYDGEIIVWN
   WD 8  312-363    NTP-----SPMDGQDH--REGPDRSVSQLAFLKTRLTKLD----SASAALISNGPGGSVCFWK
   WD 9  364-408    LFSGSGLVANFTPSRE--KAQ------------VSGIVVT----SGDTLAYLADQHGFIHVYD
   WD10  422-460    -PN-----TVTSWRAH--VSM------------VTSLELI----EGGSIVLSSSLDCTVRLWS
   WD11  461-498    --Q-----DGAYIGTF--GQN------------HPWDVFT----PDSWGHPRVPFEILTDPRS
   WD12  499-537    -MP-----THRVLETD--VPA------------GCLEGRQ----EQDHGTEEKDPCEAEKTPN

   WD40 Template    TGE-----CLRTLSGH--TSG------------VTSVSFS----PDGKRLVSGSEDGTIKVWD