Input parameters:

  Query = ENSMUSP00000106949 (Len=1271)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106949, Len=1271):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVVPEKNAVRILWGRERGTRAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYIT 80  
WD40-rpts                                            (___________________WD 1__________________

Query       81 EVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEI 160 
WD40-rpts      )   (_________________WD 2_________________)  (________________WD 3_____________

Query      161 HFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQQGDDEPEIPIDGTELSHYRQRALLQSQPVRRTPLL 240 
WD40-rpts      ___)(___________________WD 4___________________)                                

Query      241 HNFLHMLSSRSSGIQVGEQSTVQDSATPSPPPPPPQPSTERPRTSAYIRLRQRVSYPTTVECCQHPGILCLCSRCAGTRV 320 
WD40-rpts                                                                                      

Query      321 PSLLPHQDSVPPASARATTPSFSFVQTEPFHPPEQASSTQQDQGLLNRPSAFSTVQSSTAGNTLRNLSLGPTRRSLGGPL 400 
WD40-rpts                                                                           (__________

Query      401 SSHPSRYHRELAPGLTGSEWTRTVLTLNSRSEVESMPPPRTSASSVSLLSVLRQQEGGSQASVYTSATEGRGFPSSGLAT 480 
WD40-rpts      _______WD 5________________)                                                    

Query      481 ESDGGNGSSQNNSGSIRHELQCDLRRFFLEYDRLQELDQSLSGETPQTQQAQEMLNNNIESERPGPSHLPTPHSSENNSN 560 
WD40-rpts                                                                                      

Query      561 LSRGHLNRCRACHNLLTFNNDTLRWERTTPNYSSGEASSSWHVSTTFEGMPPSGNQLPPLERTEGQMPSSSRLELSSSAS 640 
WD40-rpts                                                                                      

Query      641 SQEERTVGVAFNQETGHWERIYTQSSRSGTVSQEALHQDMPEESSEEDSLRRLSPAAYYAQRMIQYLSRRDSIRQRSMRY 720 
WD40-rpts                                                                                      

Query      721 QQNRLRSSTSSSSSDNQGPSVEGTDLEFEDFEDNGDRSRHRAPRNARMSAPSLGRFVPRRFLLPEYLPYAGIFHERGQPG 800 
WD40-rpts                                                                                      

Query      801 LATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASVNVLVQNCKIYNDASCDISADGQLLAAFI 880 
WD40-rpts                                                                                      

Query      881 PSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVGLASRRILLHPSTEHMVAQVFRLQQAHGGE 960 
WD40-rpts                                                                                      

Query      961 TSMRRVFNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVICRPEALNSGIEYYWDQLSETVFTVHSSSRSSER 1040
WD40-rpts                                                                                      

Query     1041 PGTSRATWRTDRDMGLMNAIGLQPRNPTTSVTSQGTQTLALQLQNAETQTEREEEEPGAASSGPGEGEGSEYGGSGEDAL 1120
WD40-rpts                                                                                      

Query     1121 SRIQRLMAEGGMTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTGTESGAARTSSPQPSTSRGLPSEPGQLAERALSP 1200
WD40-rpts                                                                                      

Query     1201 RTASWDQPSTSGRELPQPALSSSSPVPIPVPLASNEGPTMHCNVTNNSHLPEGDGSNRGEAAGPSGEPQNR 1271
WD40-rpts                                                                             

5 WD40-repeats found in QUERY=ENSMUSP00000106949 (Len=1271):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    39-81       6.26  373.23  0.00058       20.0%     49.91
  WD 2:  Seg  8    85-124      7.97  443.82  6.5e-05       35.0%     51.23
  WD 3:  Seg 12   127-164      5.91  358.61  0.00091       20.0%     49.11
  WD 4:  Seg 16   165-208      5.34  335.27  0.00189       17.5%     53.86
  WD 5:  Seg 29   390-428      3.14  244.24  0.03137       20.0%     -5.57

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-81     WMK-WEGKRVELPDSPRSTFLLAFSPD-RTLLASTHVNHNIYITE
   WD 2   85-124    -GK----CVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWD
   WD 3  127-164    -GG----SESWFTDSNNAIASLAFHPT-AQLLLIATAN-EIHFWD
   WD 4  165-208    WSRREPFAVVKTASEMERVRLVRFDPL-GHYLLTAIVNPSNQQGD
   WD 5  390-428    -GP----TRRSLGGPLSSHPSRYHREL-APGLTGSEWTRTVLTLN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD