Input parameters:

  Query = ENSMUSP00000107420 (Len=641)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107420, Len=641):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPATQKPMRYGHTEGHTEVCFDDSGSYIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYT 80  
WD40-rpts       (_________________WD 1_________________)(_________________WD 2________________)

Query       81 FPEGVPDGILTRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDIFLASASCDGTV 160 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      161 RVWNISDQTCAVSWPVLQKSNDVVNAKSICRLAWQPKAGKLLAVPVEKSVKLYRRETWSNPFDLSDSSISQTLNIVTWSP 240 
WD40-rpts      ___)          (_________________WD 5_________________)   (__________________WD 6

Query      241 CGQYLAAGAINGLIVVWNVETKDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLENVCDLSGKVSSNKVSSRVE 320 
WD40-rpts      _________________)   (_________________WD 7_________________)       (___________

Query      321 KDYNDLFDGDDTSSAGDFLNDNAVEIPSFSKGIINEDDDNDDIMLAADHDLGDDENSVDVTMLKADLSHKEEGDDDQARS 400 
WD40-rpts      ______WD 8_________________)     (___________________WD 9__________________)    

Query      401 IHNLPLIRPQRPFYDGPMPTPRQKPFQSSSTPLHLSHRFMVWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLLNAFNY 480 
WD40-rpts      (___________________WD10__________________)                     (_______________

Query      481 TMGTLSHEAILLACESADELASKLHCLHFSSWDSSKEWMVDMPQNEDIEAICLGLGWAAAATTALLLRLFTIGGVQKEVF 560 
WD40-rpts      ___WD11_________________)      (_________________WD12_________________)         

Query      561 CLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKNQVLHGDPLPLTRKSYLTWLGFSAEGKIIFFLYIKDI 640 
WD40-rpts       (________________WD13_______________)                                          

Query      641 F 641 
WD40-rpts       

13 WD40-repeats found in QUERY=ENSMUSP00000107420 (Len=641):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       9.41  503.39  1.0e-05       30.0%     46.56
  WD 2:  Seg  4    42-80       5.36  336.08  0.00184       15.0%     39.33
  WD 3:  Seg  8    84-122      8.65  472.13  2.7e-05       30.0%     56.57
  WD 4:  Seg 12   126-164      9.74  516.83  6.7e-06       40.0%     58.24
  WD 5:  Seg 17   175-214      8.24  455.11  4.6e-05        7.5%     44.85
  WD 6:  Seg 20   218-258      7.58  427.61  0.00011       30.0%     55.31
  WD 7:  Seg 24   262-301      6.82  396.46  0.00028       12.5%     57.34
  WD 8:  Seg 28   309-348      5.03  322.32  0.00282       10.0%     15.74
  WD 9:  Seg 32   354-396      3.47  258.07  0.02053       12.5%     -11.83
  WD10:  Seg 33   401-443      2.86  233.00  0.04417       17.5%     -1.60
  WD11:  Seg 36   465-505      4.11  284.38  0.00912       12.5%     37.97
  WD12:  Seg 40   512-551      3.40  255.22  0.02241        0.0%     41.15
  WD13:  Seg 45   562-598      4.63  305.75  0.00471       12.5%     25.14

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     PATQK---PMRYG-H--TE-GHTEVCFDDSGSYIVTCG-S----DGDVRMWE
   WD 2   42-80     DLDD----DDPKS-V--NV-GEKAFSCALKNGKLVTAV-S----NNTVQVYT
   WD 3   84-122    -GVPD---GILTR-F--TT-NANHVVFNGAGNKIAAGS-S----DFLVKVVD
   WD 4  126-164    -NSQQ---QTFRG-H--DA-PVLSLSFDPKDIFLASAS-C----DGTVRVWN
   WD 5  175-214    PVLQK---SNDVV-N--AK-SICRLAWQPKAGKLLAVP-V----EKSVKLYR
   WD 6  218-258    -WSNP---FDLSD-SSISQ-TLNIVTWSPCGQYLAAGA-I----NGLIVVWN
   WD 7  262-301    -KDCM---ERVKH-E--KGYAICGLAWHPTCSRICYTD-V----EGNLGVLE
   WD 8  309-348    -KVSS---NKVSS-R--VE-KDYNDLFDGDDTSSAGDFLN----DNAVEIPS
   WD 9  354-396    INEDDDNDDIMLA-A--DH-DLGDDENSVDVTMLKADL-S----HKEEGDDD
   WD10  401-443    -IHNL---PLIRP-Q--RP-FYDGPMPTPRQKPFQSSS-TPLHLSHRFMVWN
   WD11  465-505    DTSIH---HATHLLN--AF-NYTMGTLSHEAILLACES-A----DELASKLH
   WD12  512-551    WDSSK---EWMVD-M--PQ-NEDIEAICLGLGWAAAAT-T----ALLLRLFT
   WD13  562-598    LPGPV---VSMAG-H--GE-QLCIVYHRGTG---FDGD-Q----CLGVQLLE

   WD40 Template    TGECL---RTLSG-H--TS-GVTSVSFSPDGKRLVSGS-E----DGTIKVWD