Input parameters:

  Query = ENSMUSP00000107767 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107767, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALLQSMGLTTDSPIVPPPM 80  
WD40-rpts                                                                                      

Query       81 SPSSKSVSTPSEAGSQDSGDGAVGSRRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVATPKPPVE 160 
WD40-rpts                                                                                      

Query      161 PEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLS 240 
WD40-rpts                                                                                      

Query      241 LNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPN 320 
WD40-rpts                                                         (___________________WD 1_____

Query      321 LVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH 400 
WD40-rpts      ______________)           (_________________WD 2________________)               

Query      401 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTV 480 
WD40-rpts                                             (____________________WD 3________________

Query      481 KLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIA 560 
WD40-rpts      ___)   (_________________WD 4_________________)(____________________WD 5________

Query      561 VGDSEGQIVIYDVGEIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA 611 
WD40-rpts      ___________)                                       

5 WD40-repeats found in QUERY=ENSMUSP00000107767 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   292-335      3.72  268.28  0.01499       27.5%     43.77
  WD 2:  Seg 11   347-385      5.02  321.95  0.00285       30.0%     46.36
  WD 3:  Seg 18   440-484      4.91  317.59  0.00326       22.5%     43.29
  WD 4:  Seg 21   488-527      4.44  297.96  0.00599       20.0%     52.00
  WD 5:  Seg 25   528-572      4.11  284.46  0.00910       15.0%     55.86

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  292-335    MKY-----KKTTPEYVFHCQSAVMSATF--AKFH------PNLV-VGGTYSGQIVLWD
   WD 2  347-385    TP--------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ISISTDGKICSWS
   WD 3  440-484    -AG-----ISEM---FEGHQGPITGIHC--HA-AVGAVDFSHLF-VTSSFDWTVKLWT
   WD 4  488-527    -NK-----PLYS---FEDNSDYVYDVMW--SP-T------HPALFACVDGMGRLDLWN
   WD 5  528-572    LNNDTEVPTASI---SVEGNPALNRVRW--TH-S------GREI-AVGDSEGQIVIYD

   WD40 Template    TGE-----CLRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD