Input parameters:
Query = ENSMUSP00000107770 (Len=632)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000107770, Len=632):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALLQSMGLTTDSPIVPPPM 80
WD40-rpts
Query 81 SPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSVLQLHSDSDLGRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTA 160
WD40-rpts
Query 161 QPKEDEEEEDDVATPKPPVEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFD 240
WD40-rpts
Query 241 YSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPE 320
WD40-rpts (________
Query 321 YVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGK 400
WD40-rpts ___________WD 1___________________) (_________________WD 2____________
Query 401 ICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHA 480
WD40-rpts ____) (____________________
Query 481 AVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASIS 560
WD40-rpts WD 3___________________) (_________________WD 4_________________)(____________
Query 561 VEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA 632
WD40-rpts ________WD 5___________________)
5 WD40-repeats found in QUERY=ENSMUSP00000107770 (Len=632):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 312-355 3.63 264.68 0.01676 17.5% 41.15
WD 2: Seg 11 367-405 4.99 320.72 0.00296 30.0% 45.98
WD 3: Seg 18 460-504 4.91 317.57 0.00327 22.5% 41.95
WD 4: Seg 21 508-547 4.49 300.17 0.00560 20.0% 52.63
WD 5: Seg 25 548-592 4.24 289.94 0.00768 15.0% 55.42
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 312-355 MKY-----KKTTPEYVFHCQSAVMSATFA--KFH------PNLV-VGGTYSGQIVLWD
WD 2 367-405 TP--------LS----AAAHTHPVYCVNVVGTQN------AHNL-ISISTDGKICSWS
WD 3 460-504 -AG-----ISEM----FEGHQGPITGIHC--HAAVGAVDFSHLF-VTSSFDWTVKLWT
WD 4 508-547 -NK-----PLYS----FEDNSDYVYDVMW--SPT------HPALFACVDGMGRLDLWN
WD 5 548-592 LNNDTEVPTASI----SVEGNPALNRVRW--THS------GREI-AVGDSEGQIVIYD
WD40 Template TGE-----CLRT----LSGHTSGVTSVSF--SPD------GKRL-VSGSEDGTIKVWD