Input parameters:

  Query = ENSMUSP00000107945 (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107945, Len=386):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVV 80  
WD40-rpts                                                                                      

Query       81 ARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKP 160 
WD40-rpts                                              (_____________WD 1_____________)        

Query      161 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240 
WD40-rpts           (_________________WD 2_________________)             (________________WD 3_

Query      241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 320 
WD40-rpts      ______________)      (_________________WD 4_________________)(__________________

Query      321 QVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLVCIRLNVILCTLEYFFTRLF 386 
WD40-rpts      _WD 5___________________)                                         

5 WD40-repeats found in QUERY=ENSMUSP00000107945 (Len=386):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   121-152      3.69  267.17  0.01552       12.5%     43.81
  WD 2:  Seg  8   166-205      5.83  355.42  0.00101       27.5%     49.64
  WD 3:  Seg 12   219-255      6.14  368.22  0.00068       22.5%     46.74
  WD 4:  Seg 15   262-301      7.49  424.25  0.00012       32.5%     54.29
  WD 5:  Seg 19   302-345      7.29  415.68  0.00016       30.0%     50.94

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  121-152    ------------NHEGEVNRARYMPQNP-HII-ATKTPSSDVLVFD
   WD 2  166-205    -CNP---DLRLRGHQKEGYGLSWNSNLSGH-L-LSASDDHTVCLWD
   WD 3  219-255    -------KAIFTGHSAVVEDVAWHLLHE-S-LFGSVADDQKLMIWD
   WD 4  262-301    -SKP---SHLVDAHTAEVNCLSFNPYSEFI-L-ATGSADKTVALWD
   WD 5  302-345    LRNLKLKLHTFESHKDEIFQVHWSPHNE-TIL-ASSGTDRRLNVWD

   WD40 Template    TGEC---LRTLSGHTSGVTSVSFSPDGK-R-L-VSGSEDGTIKVWD