Input parameters:

  Query = ENSMUSP00000109138 (Len=187)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109138, Len=187):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYWPSIYHTMASPCSAMAYHHDS 80  
WD40-rpts                     (________________WD 1_______________)(___________________WD 2____

Query       81 RRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLAAEWVISTGHDKCVSWMCTRSGNMLGRHFFSSWASC 160 
WD40-rpts      _______________)       (_________________WD 3________________)  (_______________

Query      161 LQYPSECRTPPPIVSCFEDRMTPVDLS 187 
WD40-rpts      ___WD 4__________________) 

4 WD40-repeats found in QUERY=ENSMUSP00000109138 (Len=187):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-52       9.35  501.07  1.1e-05       32.5%     47.30
  WD 2:  Seg  4    53-96       7.66  431.27  9.6e-05       12.5%     54.11
  WD 3:  Seg  8   104-142      8.56  468.16  3.0e-05       17.5%     49.57
  WD 4:  Seg 12   145-186      5.84  355.92  0.00099       15.0%     42.36

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-52     -------LLSKIEGHQDAVTAALLIPKEDG---VITASEDRTIRVWL
   WD 2   53-96     KRDSGQYWPSIYHTMASPCSAMAYHHDSRR---IFVGQDNGAVMEFH
   WD 3  104-142    -MN----FIKTYPAHQNRVSAIIFSLAAEW---VISTGHDKCVSWMC
   WD 4  145-186    -SG----NMLGRHFFSSWASCLQYPSECRTPPPIVSCFEDRMTPVDL

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKR---LVSGSEDGTIKVWD