Input parameters:

  Query = ENSMUSP00000109593 (Len=747)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109593, Len=747):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSHESYTNAAETPENISILSCLGETSGALVDTKTISDIKTMDPEVSLTPSSDVTGTEDSSVLSPQSTDVNSVDSYQGYE 80  
WD40-rpts                                                                                      

Query       81 GDDDDEEDDEDDKDGDSNLPSLEDSDNFISCLENSYIPQNVEKREVVEEQSLGRRFHPYELEAGEVVEGQGGGSLFYPYE 160 
WD40-rpts                                                                 (__________________WD

Query      161 LEAGEVVEAQNVQNLFHRYELEEGEVVEAQVVQSMFPYYELEAGEVVEAEEVQGFFQRYELEAREVIGAQGGQGLSRHYG 240 
WD40-rpts       1_________________) (_________________WD 2________________)                    

Query      241 LEGGEVVEATAVRRLIQHHELEEGEDVDDQEESSEMHEETSEDSSEQYDIEDDSLIDEWIALETSPLPRPRWNVLSALRD 320 
WD40-rpts                    (____________________WD 3____________________)    (_______________

Query      321 RQLGSSGRFVYEACGARLFVQRFSLEHVFEGHSGCVNTVHFNQHGTLLASGSDDLKVIVWDWLKKRSVLNFDSGHKNNIL 400 
WD40-rpts      WD 4_______________)  (_________________WD 5________________)    (______________

Query      401 QAKFLPNCNDAILAMCGRDGQVRVAQLSAVAGTHMTKRLVKHGGASHRLGLEPDSPFRFLTSGEDAVVFNIDLRQAHPAS 480 
WD40-rpts      ____WD 6_________________)      (_________________WD 7_________________)(_______

Query      481 KLLVIKDGDKKVGLYTVFVNPANVYQFAVGGQDQFMRIYDQRKIDENVNNGVLKKFCPHHLLSSDYPAHITSLMYSYDGT 560 
WD40-rpts      ______________WD 8_____________________)                   (_______________WD 9_

Query      561 EILASYNDEDIYIFNSSDSDGAQYAKRYKGHRNNSTVKGVYFYGPRSEFVMSGSDCGHIFIWEKSSCQIVQFLEADEGGT 640 
WD40-rpts      ______________)      (__________________WD10__________________)   (_____________

Query      641 INCIDSHPYLPVLASSGLDHEVKIWSPIAEPSKKLAGLKNVIKINKLKRDNFTLRHTSLFNNSMLCFLMSHVTQSNYGRS 720 
WD40-rpts      ____WD11_________________)  (_________________WD12________________)             

Query      721 WRGIRINAGGGDFSDSSSSSEETNQES 747 
WD40-rpts                                 

12 WD40-repeats found in QUERY=ENSMUSP00000109593 (Len=747):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   140-180      3.89  275.46  0.01202        7.5%     30.29
  WD 2:  Seg  9   182-220      5.26  331.75  0.00210        5.0%     38.91
  WD 3:  Seg 16   255-300      6.95  401.80  0.00024       15.0%     39.44
  WD 4:  Seg 20   305-340      4.26  290.43  0.00757        7.5%     33.36
  WD 5:  Seg 23   343-381      9.55  509.14  8.5e-06       35.0%     49.89
  WD 6:  Seg 27   386-426      6.93  401.03  0.00024       25.0%     51.47
  WD 7:  Seg 31   433-472      6.91  400.25  0.00025       20.0%     58.49
  WD 8:  Seg 35   473-520      5.63  347.04  0.00131       15.0%     53.49
  WD 9:  Seg 40   540-575      7.60  428.56  0.00010       20.0%     49.79
  WD10:  Seg 42   582-623      6.01  363.07  0.00080       32.5%     47.77
  WD11:  Seg 46   627-666      6.87  398.62  0.00026       20.0%     52.57
  WD12:  Seg 49   669-707      6.94  401.51  0.00024       15.0%     47.97

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  140-180    ELE-------A------GEVVEGQG--GGS-LFYPYE-LEAG--E-VVEAQNVQNLFHRYE
   WD 2  182-220    EEG-------E------V-VEAQ-V--VQS-MFPYYE-LEAG--E-VVEAEEVQGFFQRYE
   WD 3  255-300    LIQ-------HHELEEGEDVDDQ-E--ESS-EMHEET-SEDS--S-EQYDIEDDSLIDEWI
   WD 4  305-340    -SP-------L------PRPRWN-V--LSA-LRDRQL-GSSG--R-FVYEAC---GARLFV
   WD 5  343-381    -FS-------L------EHVFEG-H--SGC-VNTVHF-NQHG--T-LLASGSDDLKVIVWD
   WD 6  386-426    -RS-------V------LNFDSG-H--KNN-ILQAKF-LPNCNDA-ILAMCGRDGQVRVAQ
   WD 7  433-472    -TH-------M------TKRLVK-H--GGA-SHRLGL-EPDS--PFRFLTSGEDAVVFNID
   WD 8  473-520    LRQAHPASKLL------VIKDGD-K--KVG-LYTVFV-NPAN-VY-QFAVGGQDQFMRIYD
   WD 9  540-575    -----------------HLLSSD-Y--PAH-ITSLMY-SYDG--T-EILASYNDEDIYIFN
   WD10  582-623    -AQ-------Y------AKRYKG-HRNNST-VKGVYFYGPRS--E-FVMSGSDCGHIFIWE
   WD11  627-666    -CQ-------I------VQFLEA-D--EGGTINCIDS-HPYL--P-VLASSGLDHEVKIWS
   WD12  669-707    -AE-------P------SKKLAG-L--KNV-IKINKL-KRDN--F-TLRHTSLFNNSMLCF

   WD40 Template    TGE-------C------LRTLSG-H--TSG-VTSVSF-SPDG--K-RLVSGSEDGTIKVWD