Input parameters:

  Query = ENSMUSP00000111216 (Len=608)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111216, Len=608):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGISPEPPLVPTPMS 80  
WD40-rpts                                                                                      

Query       81 PSSKSVSTPSDAGSQDSGDLGPLTRRRLHKLGVSKVTQVDFLPREVVSYSKETQTPLATHQSEEDEEDEEMVEPKIGHDS 160 
WD40-rpts                                                                                      

Query      161 ELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSGRELEEKDGDVQAGANLSFNR 240 
WD40-rpts                                                                                      

Query      241 QFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVV 320 
WD40-rpts                                                      (___________________WD 1________

Query      321 GGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKS 400 
WD40-rpts      ___________)           (_________________WD 2________________)                  

Query      401 KPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLW 480 
WD40-rpts                                          (____________________WD 3___________________

Query      481 TTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGD 560 
WD40-rpts      )   (_________________WD 4_________________)(____________________WD 5___________

Query      561 SEGRIWIYDVGELAVPHNDEWTRFARTLVEIRANRADSEEEGAVELAA 608 
WD40-rpts      ________)                                       

5 WD40-repeats found in QUERY=ENSMUSP00000111216 (Len=608):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   289-332      3.65  265.61  0.01628       30.0%     40.79
  WD 2:  Seg 11   344-382      4.88  316.30  0.00340       25.0%     43.92
  WD 3:  Seg 18   437-481      5.08  324.31  0.00265       25.0%     42.60
  WD 4:  Seg 21   485-524      4.47  299.36  0.00574       20.0%     51.85
  WD 5:  Seg 25   525-569      4.20  288.16  0.00812       20.0%     56.21

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  289-332    MKF-----KKTTPEYVFHCQSSVMSVCF--ARFH------PNLV-VGGTYSGQIVLWD
   WD 2  344-382    TP--------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ITVSTDGKMCSWS
   WD 3  437-481    -AG-----IGEV---FEGHQGPVTGINC--HM-AVGPIDFSHLF-VTSSFDWTVKLWT
   WD 4  485-524    -NK-----PLYS---FEDNADYVYDVMW--SP-V------HPALFACVDGMGRLDLWN
   WD 5  525-569    LNSDTEVPTASV---AIEGASALNRVRW--AQ-G------GKEV-AVGDSEGRIWIYD

   WD40 Template    TGE-----CLRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD