Input parameters:

  Query = ENSMUSP00000111217 (Len=645)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111217, Len=645):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGISPEPPLVQPLHF 80  
WD40-rpts                                                                                      

Query       81 LTWDTCYFHYLVPTPMSPSSKSVSTPSDAGSQDSGDLGPLTRTLQWDTDPSVLQLQSDSELGRRLHKLGVSKVTQVDFLP 160 
WD40-rpts                                                                                      

Query      161 REVVSYSKETQTPLATHQSEEDEEDEEMVEPKIGHDSELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRV 240 
WD40-rpts                                                                                      

Query      241 IERALAEDSDIFFDYSGRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGV 320 
WD40-rpts                                                                                      

Query      321 ALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGT 400 
WD40-rpts           (___________________WD 1___________________)           (_________________WD

Query      401 QNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVF 480 
WD40-rpts       2________________)                                                      (______

Query      481 EGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLW 560 
WD40-rpts      ______________WD 3___________________)   (_________________WD 4_________________

Query      561 NLNSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDEWTRFARTLVEIRANRADSEEEGA 640 
WD40-rpts      )(____________________WD 5___________________)                                  

Query      641 VELAA 645 
WD40-rpts           

5 WD40-repeats found in QUERY=ENSMUSP00000111217 (Len=645):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   326-369      3.58  262.75  0.01778       30.0%     41.56
  WD 2:  Seg 11   381-419      4.74  310.51  0.00406       25.0%     42.83
  WD 3:  Seg 18   474-518      4.85  315.14  0.00352       25.0%     42.39
  WD 4:  Seg 21   522-561      4.22  289.09  0.00789       20.0%     51.81
  WD 5:  Seg 25   562-606      4.03  281.26  0.01005       20.0%     54.75

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  326-369    MKF-----KKTTPEYVFHCQSSVMSVCF--AR-----FHPNLV-VGGTYSGQIVLWD
   WD 2  381-419    TP--------LS---AAAHTHPVYCVNVVGTQ------NAHNL-ITVSTDGKMCSWS
   WD 3  474-518    -AG-----IGEV---FEGHQGPVTGINC--HMAVGPIDFSHLF-VTSSFDWTVKLWT
   WD 4  522-561    -NK-----PLYS---FEDNADYVYDVMW--SP------VHPALFACVDGMGRLDLWN
   WD 5  562-606    LNSDTEVPTASV---AIEGASALNRVRW--AQ------GGKEV-AVGDSEGRIWIYD

   WD40 Template    TGE-----CLRT---LSGHTSGVTSVSF--SP------DGKRL-VSGSEDGTIKVWD