Input parameters:
Query = ENSMUSP00000111221 (Len=628)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000111221, Len=628):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGISPEPPLVPTPMS 80
WD40-rpts
Query 81 PSSKSVSTPSDAGSQDSGDLGPLTRTLQWDTDPSVLQLQSDSELGRRLHKLGVSKVTQVDFLPREVVSYSKETQTPLATH 160
WD40-rpts
Query 161 QSEEDEEDEEMVEPKIGHDSELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG 240
WD40-rpts
Query 241 RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVF 320
WD40-rpts (___________
Query 321 HCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCS 400
WD40-rpts ________WD 1___________________) (_________________WD 2_______________
Query 401 WSLDMLSTPQESMELVYNKSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVG 480
WD40-rpts _) (____________________WD
Query 481 PIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVAIEG 560
WD40-rpts 3___________________) (_________________WD 4_________________)(_______________
Query 561 ASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDEWTRFARTLVEIRANRADSEEEGAVELAA 628
WD40-rpts _____WD 5___________________)
5 WD40-repeats found in QUERY=ENSMUSP00000111221 (Len=628):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 309-352 3.59 263.13 0.01757 30.0% 41.49
WD 2: Seg 11 364-402 4.77 311.78 0.00391 25.0% 45.61
WD 3: Seg 18 457-501 4.92 317.97 0.00323 25.0% 42.88
WD 4: Seg 21 505-544 4.29 291.78 0.00726 20.0% 52.15
WD 5: Seg 25 545-589 4.10 284.05 0.00922 20.0% 55.97
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 309-352 MKF-----KKTTPEYVFHCQSSVMSVCF--ARFH------PNLV-VGGTYSGQIVLWD
WD 2 364-402 TP--------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ITVSTDGKMCSWS
WD 3 457-501 -AG-----IGEV---FEGHQGPVTGINC--HM-AVGPIDFSHLF-VTSSFDWTVKLWT
WD 4 505-544 -NK-----PLYS---FEDNADYVYDVMW--SP-V------HPALFACVDGMGRLDLWN
WD 5 545-589 LNSDTEVPTASV---AIEGASALNRVRW--AQ-G------GKEV-AVGDSEGRIWIYD
WD40 Template TGE-----CLRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD