Input parameters:

  Query = ENSMUSP00000111263 (Len=198)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111263, Len=198):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGH 80  
WD40-rpts             (____________________WD 1___________________)   (_________________WD 2___

Query       81 QLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAR 160 
WD40-rpts      ______________)   (____________________WD 3___________________)   (_____________

Query      161 PGMPMCLGLWQESQKPQCPCLNWYRRGGGKVITGYCLF 198 
WD40-rpts      ____WD 4________________)             

4 WD40-repeats found in QUERY=ENSMUSP00000111263 (Len=198):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-52       7.76  435.07  8.5e-05       30.0%     50.97
  WD 2:  Seg  5    56-95       8.61  470.23  2.9e-05       32.5%     54.81
  WD 3:  Seg  9    99-143      5.47  340.82  0.00159       15.0%     44.65
  WD 4:  Seg 13   147-185      7.67  431.36  9.6e-05        5.0%     37.85

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-52     PPGPRFVLRGTQS-AVN----TLHFCPPSQAAGNPLL--FSGSQNGLVHIWS
   WD 2   56-95     -RRIVTTLNGHGGQGVI----WLKTLPQGHQ-----L--LSQGRDLRLCLWD
   WD 3   99-143    -GRNTIMDSVQLD-SVGFCRGSILVRGQQCW-----MLAVPGKGSDEVQILE
   WD 4  147-185    -KTSVCTLKPEAD-ARP----GMPMCLGLWQ-----E--SQKPQCPCLNWYR

   WD40 Template    TGECLRTLSGHTS-GVT----SVSFSPDGKR-----L--VSGSEDGTIKVWD