Input parameters:

  Query = ENSMUSP00000111353 (Len=360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111353, Len=360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQPLRGVTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSSPKFSEISVL 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 IWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLV 160 
WD40-rpts                                                     (____________________WD 2________

Query      161 FPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATL 240 
WD40-rpts      ____________)        (_________________WD 3_________________)   (_______________

Query      241 YCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNV 320 
WD40-rpts      ___WD 4_________________)                                                       

Query      321 NSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICDDEDF 360 
WD40-rpts                                              

4 WD40-repeats found in QUERY=ENSMUSP00000111353 (Len=360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       3.62  264.35  0.01692       20.0%     42.67
  WD 2:  Seg 12   128-173      4.26  290.56  0.00754       22.5%     39.89
  WD 3:  Seg 16   182-221      6.92  400.61  0.00025       32.5%     49.95
  WD 4:  Seg 20   225-265      6.18  369.82  0.00065       27.5%     56.75

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MT-----QQPL--RGVTSLHFNQDQSCFC-CAMETG--VRIYN
   WD 2  128-173    FPDSPRKLFEFDTRDNP--KGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
   WD 3  182-221    -SSAPFTI-----NAHQ--SDVACVSLNQPGTVVA-SASQKGTLIRLFD
   WD 4  225-265    -KEKLVEL-----RRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIFA

   WD40 Template    TGECLRTL-----SGHT--SGVTSVSFSPDGKRLV-SGSEDGT-IKVWD