Input parameters:

  Query = ENSMUSP00000111354 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111354, Len=325):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQPLRGVTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKI 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 VIVLRNRIYVYSFPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDV 160 
WD40-rpts                  (____________________WD 2____________________)        (_____________

Query      161 ACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRS 240 
WD40-rpts      ____WD 3_________________)(___________________WD 4___________________)          

Query      241 ALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDIC 320 
WD40-rpts                                                                                      

Query      321 DDEDF 325 
WD40-rpts           

4 WD40-repeats found in QUERY=ENSMUSP00000111354 (Len=325):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       3.46  257.66  0.02079       20.0%     39.69
  WD 2:  Seg  9    93-138      3.52  259.93  0.01939       22.5%     36.73
  WD 3:  Seg 13   147-186      6.76  394.10  0.00030       32.5%     50.41
  WD 4:  Seg 17   187-230      5.77  353.18  0.00108       20.0%     51.72

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MT-----Q----QPLRGVTSLHFNQDQSCFC-CAMETG--VRIYN
   WD 2   93-138    FPDSPRKLFEFDTR----DNPKGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
   WD 3  147-186    -SSAPFTI-----N----AHQSDVACVSLNQPGTVVA-SASQKGTLIRLFD
   WD 4  187-230    TQSKEKLV-----ELRRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIFA

   WD40 Template    TGECLRTL-----S----GHTSGVTSVSFSPDGKRLV-SGSEDGT-IKVWD