Input parameters:

  Query = ENSMUSP00000111491 (Len=741)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111491, Len=741):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSSVLEVSHVFCCPNRVRGALSWNTGPGGLLAFGTSCSVVLYDPQKKVVITNLNGHTARVNCLQWIRTEDGSPSNELVS 80  
WD40-rpts          (_________________WD 1_________________)   (___________________WD 2_________

Query       81 GGSDNRVIHWELENNQVLKSVRLQGHEGPVCAVHAIYQSGPSEGEQHALIASAASDSTVRIWSKKGSEVKYLQTLSFRDG 160 
WD40-rpts      __________)            (_________________WD 3_________________)                 

Query      161 FVLSVCLAILPGTNGVRTTVAVTLETVLAGHENWVNAVHWQPSFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQ 240 
WD40-rpts                           (_____________________WD 4_____________________)(__________

Query      241 VRVGEVGGNTLGFYDCQFGENGTMIIAHAFHGALHLWKQSTVNPRQWAPEIVISGHFDGVQDLMWDPEGEFIITTSTDQT 320 
WD40-rpts      ____________WD 5_____________________)        (_________________WD 6____________

Query      321 TRLFAPWKKKDQKDRSQVTWHEIARPQIHGYNIKCLAMIDRFQFVSGADEKVLRVFSAPRNFVENFSVISRQSLSHMLCD 400 
WD40-rpts      ____)              (________________WD 7________________)                       

Query      401 DQDLPEGATVPALGLSNKALFQGDIASQPFEEDELISPAFGSPQVTFQPAVLNEPPTEDHLLQNTLWPEIQKLYGHGYEI 480 
WD40-rpts                       (___________________WD 8__________________)      (_____________

Query      481 VCVACNNSKTLLASACKASQKEHAAIILWSTASWKQVQSLAFHTLTVTQMTFSPDDKFLLAVSRDRTWSLWKRQDATSSE 560 
WD40-rpts      ______WD 9___________________)   (_________________WD10________________)        

Query      561 FDPFFSLFAFTNKITSVHSRIIWSCDWSPDNKYFFTGSRDKKVVVWGECKSSHNPMEHPIRPCSSILDVGSSVTAVSVCP 640 
WD40-rpts              (_________________WD11________________)            (___________________W

Query      641 VLNPAQRYIVAIGLESGKICIYSWNKTNQEINDWTSCVETNPSQSHSLGIRRLCWKSCSDDDDDDDDDDTEQSEEGPEWL 720 
WD40-rpts      D12___________________)  (________________________________WD13__________________

Query      721 HFASCGEDHTVKIYRVNRRAL 741 
WD40-rpts      ______________)      

13 WD40-repeats found in QUERY=ENSMUSP00000111491 (Len=741):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       7.15  409.91  0.00019       10.0%     53.78
  WD 2:  Seg  5    48-91       6.36  377.50  0.00051       27.5%     57.12
  WD 3:  Seg 10   104-143      6.58  386.64  0.00038       17.5%     19.71
  WD 4:  Seg 15   182-229      6.01  362.83  0.00080       32.5%     49.61
  WD 5:  Seg 19   230-278      7.23  413.31  0.00017       20.0%     56.84
  WD 6:  Seg 23   287-325      7.95  442.97  6.7e-05       25.0%     48.20
  WD 7:  Seg 27   340-377      5.07  324.10  0.00267       15.0%     51.78
  WD 8:  Seg 34   418-460      3.64  265.19  0.01649        5.0%      8.50
  WD 9:  Seg 37   467-510      6.55  385.08  0.00040       22.5%     53.38
  WD10:  Seg 41   514-552      9.39  502.60  1.0e-05       37.5%     56.41
  WD11:  Seg 45   569-607      7.30  416.14  0.00015       30.0%     43.37
  WD12:  Seg 48   620-663      4.86  315.43  0.00349       25.0%     47.62
  WD13:  Seg 52   666-735      4.74  310.61  0.00405       15.0%     30.46

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     VL---E---------VS------------------------------HVFCCPNRVRGALSWNT-----G---------PGGLLAFG-----TSCSVVLYD
   WD 2   48-91     -K---V---------VI------------------------------TNLNGHTARVNCLQWIRTEDGSP---------SNELVSGG-----SDNRVIHWE
   WD 3  104-143    QG---H---------EG------------------------------PVCAVHAIYQSGPSEGE-----Q---------HALIASAA-----SDSTVRIWS
   WD 4  182-229    -V---T---------LE------------------------------TVLAGHENWVNAVHWQP-----SFYKDGVLQQPVRLLSAS-----MDKTMILWA
   WD 5  230-278    PD---EESGVWLEQVRV------------------------------GEVGGNTLGFYDCQFGE-----N---------GTMIIAHA-----FHGALHLWK
   WD 6  287-325    -W---A---------PE------------------------------IVISGHFDGVQDLMWDP-----E---------GEFIITTS-----TDQTTRLFA
   WD 7  340-377    -W---H---------EI------------------------------ARPQIHGYNIKCLAMI------D---------RFQFVSGA-----DEKVLRVFS
   WD 8  418-460    KALFQG---------DI------------------------------ASQPFEEDELISPAFGS-----P---------QVTFQPAV-----LNEPPTEDH
   WD 9  467-510    -W---P---------EI------------------------------QKLYGHGYEIVCVACNN-----S---------KTLLASACKASQKEHAAIILWS
   WD10  514-552    -W---K---------QV------------------------------QSLAFHTLTVTQMTFSP-----D---------DKFLLAVS-----RDRTWSLWK
   WD11  569-607    -A---F---------TN------------------------------KITSVHSRIIWSCDWSP-----D---------NKYFFTGS-----RDKKVVVWG
   WD12  620-663    -I---R---------PC------------------------------SSILDVGSSVTAVSVCPVLNPAQ---------RYIVAIGL-----ESGKICIYS
   WD13  666-735    KT---N---------QEINDWTSCVETNPSQSHSLGIRRLCWKSCSDDDDDDDDDDTEQSEEGP-----E---------WLHFASCG-----EDHTVKIYR

   WD40 Template    TG---E---------CL------------------------------RTLSGHTSGVTSVSFSP-----D---------GKRLVSGS-----EDGTIKVWD